Detailed information on CNT3054794


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01300|NU1M_PETHY, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30162048Amborella trichopodaPistacia vera3.3334.7891.6796forward

Expression of CNT3054794

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRERSLPSNLRGYVLDVLLICTENKLRKREKP*

>peptide 2 (42 aa)
MPCPNIKLKADRALKRSQPKLFKKVLASRHAHRSFQEVGCIS*

>peptide 3 (43 aa)
MTKDQESMTHQHKSEHSFIGHFTKKGNSKFVCLIHCQSTVHMG*

>peptide 4 (46 aa)
MMIKKYVYEINIRNNIQDLKIKKYYKPNTITGRMTWSTRTPRHLQA*

>peptide 5 (50 aa)
TRVLVWGKQGLETWRPSSFPSHTHNESVREREASHRIPRKSSSSFSSYDM*

>peptide 6 (58 aa)
MGTMTSSEATASTTGSTKADSLKKVFDNIIHWSNLPTWFPYLNLQCCTIICALGRMERL

Sequence

>CNT3054794
GCACAAGGGTCCTTGTGTGGGGTAAGCAAGGTCTCGAAACCTGGCGACCATCTTCTTTTCCTTCTCACACACACAATGAGTCCGTGAGAGAGAGAGAGGC
CTCACATCGAATACCTAGAAAATCATCTTCTTCTTTTTCTTCTTATGACATGTAGAGAGAGCAGTGGGTCCGTGTATGAGAGAGAGAAGCCTCCCATCGA
ACCTTAGAGGCTATGTACTTGATGTGCTTCTAATATGTACAGAGAACAAATTGAGAAAGAGAGAAAAGCCTTGATTAGGCCTTAACTTTTTATTTTTATT
TTCAAGGTGGCCTTCCATTTTTTAAAAAATGAGGGTGGAATTAGGCGGGCACCTTGGGTGCCTAGGCCCCACCTTCAGCCAGTCTAGGAACATGCCTGCC
TAGGGCACATATAGGCTTTATAAAAAAGCAAAGCAAAATCTCATCTCAAATCCTCATCTGAAGAGTAGTTGGGGCATCAGAAATCTCTATGGTGGCTTTA
AAATCAATTTCCAACATCGACTATGAAATTTCAAGATAAGAAAATTGTATAGATCTTGCAAATCCATGAACACTTATTTTTAGAGTGAATTGGATAATCT
AGATAGGTGTTACAATATACGTTATTTTGAAGGCTTGAGATCCTTTTTGTTTTTTTGCAACCATAATAATCAAGGCCGAAATGATCAATTTGAAGGTTTT
CCAACACCAAAACTGTAATCCTTTGGCATGCCTTGCCCCAACATCAAATTAAAGGCAGATCGGGCACTGAAAAGGAGCCAACCCAAGCTCTTCAAGAAAG
TTTTGGCTAGTAGGCATGCACATCGCTCTTTCCAGGAGGTTGGCTGCATATCCTAGATCTTCCCATTTGCAATAAGATCCCAGGCTCGATTTGGTTTAGT
ATCAAGGTGAGTATTTTTTTTGCAACCAAAATAGTCAAGGCCGAAATGATCGATTTCAAGATTTTCCAACACCAAAACTGTAATCCTTGGGCGTGCCATT
CCCCAACATCTAAGTAAGGGCAGGTCGGGTGCCGAAAAGGAACCAACCCAAGCTCTTCAAGAAAGTTTTGCTTGGTAGGCATGCACATTGCTCTTTCCAG
GAGATTGGCCGCCTATCCTTGATCTTCTCATTTCCAATAAGTTCCCGGGCTTGATCTGATTTAGTATCAAGGTGAGGATTTTTTTCTGCAACTATAATGG
ACAAGGTCGAAATGATCGATTTGAAAGTTTTCCAACACCAGAACTACAATCTTTGGGCATGCCTTGCCCCAACATCTAATTAAGGGCCTGTTGGGTACCG
AAAAGGAACCAACCCAAGCTCTTTAAGAAAGTTTTGCTTAGTAGGCATGCACATCGCTCTTTCCAAGAGGTTGGCCGCCTATCCTACATCTTCCCATTTC
CAATAAGATCTCGGGCTCGATCTAGTTTAATATCAAGATGAGTTTTGAGGTGAGGATTTACTTCTACAGCCCTATTAAACCATTTCAAGTAGAACGTGGA
TATCACACCCATCTCAAGTAGCAAAAGTTTTATTTATTTTTTGCTCCGGTAAGTATATAAAACACTTCAATCTCCAATGAGAAATAACAAATTCTTTTGA
CTAAATTAGGAAATGATTGAATTCATCCCGAGTTTCCTTCTTCCGGTCGCCCCTATAATTTTGAGGTTTTTTTCATTTATATAAAAATTTTCTAGGATTG
GGTCCGGGGCTAGGTCCAGGTCCGGGTCCGGGTTTGGTTCCGGGTTAGGGTCCGGGTCCGGGTCCAGGTCCGCGTCTGGGTCTGAGATTTGGATCCAGCA
GGTCAGGTCTGATCGGGTCGGGCGGGGTCGAAATGACTTGGACCCAACCTGGGTCCAAGTTGGGTCTAGGTCCATCTGAAACATAGTAAGGTCCGGCCCG
GTACGGTCCAAGTTGCCACCCCTTTGTTGCCCATCCTTAACCTTCAAGCTAAGGGTCGTATACACTACAAGGTTCTTATCTATCTGGATGCTTGCATGCA
CCACCTTAACCGTGGCTTGATATGCATGTTGAAACAGTAACAACCCGCAATAAGTAACATGAATATCTGAAACTATATTCACATGGATATTTAACACTAC
ATTGACATGGAAAATTGGAAATCCATGAACAAATCGAACATCACCCATCCAAGTTGAATCCATATTAATAAATCTATATCCATAATTTATTAATTTATGC
ATATTGAAATACCTAACATGACTCGAAGAATGCATAGCTAAATGAACATATCCAGTAACCATATCCAATAAATGATGATTAAGAAATATGTCTACGAAAT
AAATATCAGAAACAACATCCAAGACCTCAAAATCAAGAAATACTACAAACCAAATACAATTACTGGAAGAATGACATGGAGCACAAGAACTCCACGTCAT
TTGCAAGCATAATTTTGGAGGAGCAATGATTTTGACAGAATCATGACAAAGGATCAAGAATCAATGACTCACCAGCATAAATCAGAACATAGCTTTATAG
GACATTTTACTAAAAAAGGAAATTCCAAATTTGTCTGTTTAATTCACTGCCAGTCAACTGTTCATATGGGGTGAAAAGGACAATAAAATTTCTTTATATA
AGGGCATCCTTTGCGGAACCACCACTTCAGAAAGAATTTTTCTCAAGCTCAACTCTAGGACGTAGTGGGCACGATTCCAAGCGCCGACCTGGAACTTTTT
GTGCATGGGAACAATGACATCAAGCGAAGCTACCGCATCAACTACAGGCAGCACAAAGGCTGATAGTCTCAAGAAAGTTTTTGACAACATAATTCATTGG
AGTAATTTACCTACTTGGTTTCCCTATTTGAATTTGCAATGTTGTACAATAATCTGTGCTCTTGGACGAATGGAAAGATTAT