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Detailed information on CNT30547793


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM7|PIP23_MAIZE, E-value = 4e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Ipomoea trilobaEucalyptus grandis22.3727.4586.7398forward
CNT30615812Ipomoea trilobaSesamum indicum10.7322.0791.4947forward
CNT30543361Ipomoea trilobaBrassica napus21.2330.182.893forward
CNT30646760Ipomoea trilobaRosa chinensis27.1728.481.51119forward
CNT30477240Ipomoea trilobaArabidopsis halleri35.6227.0881.41156forward
CNT30355349Ipomoea trilobaLactuca sativa27.1719.8381.51119forward
CNT30570969Ipomoea trilobaVitis vinifera19.8631.6483.9187forward

Expression of CNT30547793

Peptides detected in this lncRNA

>peptide 1 (33 aa)
AIPVKISFLKRLHQPYTTDSTQTLCYHIHHCPH*

>peptide 2 (30 aa)
MPRMPTPPQSWPPAFKSVWWLYPMTVKTVT*

Sequence

>CNT30547793
GCCATACCTGTTAAAATAAGCTTTCTGAAACGCCTTCACCAACCCTACACCACAGATAGCACCCAAACACTGTGCTATCATATACACCACTGCCCTCACT
AGCGACACCTTTCTCCCCACAAATAGCCCAAACGTCACCGCCGGCCCAGGCGATGCCGAGGATGCCGACGCCGCCGCAGTCTTGGCCGCCGGCTTTCAAG
TCGGTCTGGTGGCTGTACCCAATGACCGTCAAAACGGTGACGTAAAGAAACAAAAGGGTGGCGATGAACTCGGCGATGGCGGCCCTGTAAAATGACCATT
TTGTCAGCTCGTCGAAGTCGATCAGCGGCGCCGGCGGCGGGTCATGGTAGTCCTTAGCCGAATGCTCCGCCGAGCCTTCAATGTCGTCCTTAGCCATAGC
TAATAACCAAAAATATTTTTATTATATACTTTCTTTTT