« Back to Ipomoea triloba search


Detailed information on CNT30547605


BLAST search results

BLAST vs Swiss-Prot:
sp|P29517|TBB9_ARATH, E-value = 6e-13

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220716Ipomoea trilobaHordeum vulgare34.7983.7786.39191forward
CNT30144688Ipomoea trilobaMedicago truncatula33.752.1186.49185forward
CNT30611949Ipomoea trilobaArabis alpina20.432.3783.93112forward
CNT30136247Ipomoea trilobaLolium perenne48.2786.685.28265forward
CNT30683531Ipomoea trilobaTriticum urartu49.9189.2587.23274forward
CNT30721349Ipomoea trilobaTriticum spelta49.9191.3387.23274forward
CNT30106557Ipomoea trilobaOryza longistaminata26.9669.1684.46148forward
CNT30148523Ipomoea trilobaBrachypodium distachyon42.2635.9784.91232forward

Expression of CNT30547605

Peptides detected in this lncRNA

>peptide 1 (48 aa)
APIHKLDGTLGLDGSHSSVHVLGHHITTEHQAACHVFAVARVALDHHR*

>peptide 2 (65 aa)
HQSTNWMVRLVLMVATAAFTSLGTTSPRNIRQHAMYLPWRGSHLTIIDDGSKALLVISATESCSW*

>peptide 3 (54 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTERRSSRRDPRPEPVPPPTALKTRNP*

Sequence

>CNT30547605
GGCACCAATCCACAAACTGGATGGTACGCTTGGTCTTGATGGTAGCCACAGCAGCGTTCACGTCCTTGGGCACCACATCACCACGGAACATCAGGCAGCA
TGCCATGTATTTGCCGTGGCGAGGGTCGCACTTGACCATCATAGATGATGGCTCAAAAGCACTGTTGGTGATCTCAGCAACAGAGAGTTGTTCATGGTAG
GCTTTCTCAGCTGATATGACAGGGGCATATGAGGAAAGCATGAAATGAATCCTTGGGTAGGGCACAAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCA
GATGTCATAAATGGCCTCATTGTCAAGAAGAACTGCCACATCAGTGTGCTCGAGAAGGGAATGGGTTGACAGGACACTGTTGTATGGCTCAACAACAGAG
AGACGCTCAAGCAGAAGAGATCCCAGGCCTGAACCAGTGCCTCCACCCACAGCATTGAAGACAAGAAATCCTTGAAGACCAGTGCAGTTGTCAGCAAGTT
TACGGATCCTATCCAAGCAAAGATCAACAATCTCCTTCCCAACTGCACA