Detailed information on CNT30547577


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43473|TBA1_HORVU, E-value = 2e-87

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30507454Ipomoea trilobaNicotiana attenuata62.5251.9385.76337forward
CNT30721351Ipomoea trilobaTriticum spelta34.6928.2586.63187forward
CNT30558847Ipomoea trilobaPanicum hallii57.5142.0188.39310forward

Expression of CNT30547577

Peptides detected in this lncRNA

>peptide 1 (89 aa)
EHLRNAGGVGDHANSPLHLGKIASGNDSWWLVVDTALESSWAPIHKLDGTLGLDGSHSSVHVLGHHITTEHQAACHVFAVARVALDHHR*

>peptide 2 (59 aa)
MVRLVLMVATAAFTSLGTTSPRNIRQHAMYLPWRGSHLTIIDDGSKALLVISATESCSW*

>peptide 3 (33 aa)
RTPPQRWWSWRSCKQPSAPWQDRLRERQLVAGS*

>peptide 4 (31 aa)
NTSATLVELEIMQTALCTLARSPPGTTVGGW*

Sequence

>CNT30547577
AGAACACCTCCGCAACGCTGGTGGAGTTGGAGATCATGCAAACAGCCCTCTGCACCTTGGCAAGATCGCCTCCGGGAACGACAGTTGGTGGCTGGTAGTT
GATACCGCACTTGAATCCAGTTGGGCACCAATCCACAAACTGGATGGTACGCTTGGTCTTGATGGTAGCCACAGCAGCGTTCACGTCCTTGGGCACCACA
TCACCACGGAACATCAGGCAGCATGCCATGTATTTGCCGTGGCGAGGGTCGCACTTGACCATCATAGATGATGGCTCAAAAGCACTGTTGGTGATCTCAG
CAACAGAGAGTTGTTCATGGTAGGCTTTCTCAGCTGATATGACAGGGGCATATGAGGAAAGCATGAAATGAATCCTTGGGTAGGGCACAAGGTTGGCCTG
AACCAGTGCCTCCACCCACAGCATTGAAGACAAGAAATCCTTGAAGACCAGTGCAGTTGTCAGCAAGTTTACGGATCCTATCCAAGCAAAGATCAACAAT
CTCCTTCCCAACTGCACACATACCAAGCAGACAGAGAAC