Detailed information on CNT30547563


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 2e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615929Ipomoea trilobaSesamum indicum97.6820.1582.49674forward
CNT30637458Ipomoea trilobaCapsicum annuum97.5415.3384.7673forward
CNT30511543Ipomoea trilobaSolanum lycopersicum92.7557.8184.84640forward
CNT3061706Ipomoea trilobaArabidopsis lyrata94.6471.2982.7653forward
CNT30153909Ipomoea trilobaPrunus persica88.5574.2484.12611forward
CNT30429148Ipomoea trilobaPapaver somniferum93.3348.0282.45644forward
CNT3032819Ipomoea trilobaTheobroma cacao87.198.8584.86601forward
CNT3021694Ipomoea trilobaPopulus trichocarpa96.9669.0483.71669forward
CNT30120532Ipomoea trilobaCitrus clementina92.7574.4282.81640forward
CNT3036798Ipomoea trilobaCucumis melo92.0329.6281.42635forward

Expression of CNT30547563

Peptides detected in this lncRNA

>peptide 1 (61 aa)
NFLKATTTKTKHKVKGGLLLDVIVCKGAPILKLLTSKNQSLLVWRNTFLVLNLCFNIVNCI*

>peptide 2 (31 aa)
MPSLSWIFALTLSIVSELSTSNVMVFPVSVFT

>peptide 3 (55 aa)
KLFKSHHHEDEAQGEGWTPSGCYSLQGCAHPQVAYQQKSVAAGLEEYLPCPESLL*

Sequence

>CNT30547563
AAACTTTTTAAAAGCCACCACCACGAAGACGAAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCTGCAAGGGTGCGCCCATCCTCAAGTTG
CTTACCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACTTCC
AATGTGATTGTCTTCCCTGTTAAGGTCTTGACAAAGATCTGCATCCCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGT
CTGCAAGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTAACATT
GTCAATTGTATCTGAGCTCTCCACTTCCAATGTGATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCATCCCTCCCCTCAGGCGCAGCACTAAATGG
AGTGTTGACTCCTTCTGAATATTGTAGTCTGCAAGTGTCCTACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTT
CCTTATCTTGGATCTTTGCTTTAACGTTGTCAATTGTGTCTGAGCTCTCCACTTCCAATGTGATGGTCTTCCCTGTGAGTGTCTTTACAA