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Detailed information on CNT30547527


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Ipomoea trilobaSetaria viridis18.7138.9490.1281forward
CNT30532226Ipomoea trilobaEucalyptus grandis60.9736.5183.33264forward
CNT30512951Ipomoea trilobaJuglans regia64.235.6486.33278forward
CNT30372986Ipomoea trilobaArabidopsis thaliana63.5126.9181.09275forward
CNT3019597Ipomoea trilobaCitrullus lanatus37.8821.9383.54164forward
CNT30728649Ipomoea trilobaCorchorus capsularis30.7212.2187.22133forward
CNT30405825Ipomoea trilobaBeta vulgaris23.3344.184.16101forward
CNT3045373Ipomoea trilobaPrunus dulcis69.2838.2784300forward
CNT30561656Ipomoea trilobaActinidia chinensis68.3621.1485.47296forward
CNT30309793Ipomoea trilobaCamelina sativa67.6737.6680.89293forward
CNT3015270Ipomoea trilobaZea mays23.3322.386.14101forward
CNT30203835Ipomoea trilobaHelianthus annuus29.7926.8881.4129forward
CNT30345702Ipomoea trilobaEragrostis tef67.6736.2681.57293forward
CNT30361520Ipomoea trilobaSorghum bicolor28.6418.1384.68124forward
CNT30154011Ipomoea trilobaPrunus persica57.9789.3283.67251forward
CNT30332479Ipomoea trilobaDioscorea rotundata30.9547.3582.09134forward
CNT30149525Ipomoea trilobaBrachypodium distachyon23.3333.4482.18101forward
CNT30100260Ipomoea trilobaOryza rufipogon68.3641.2384.46296forward
CNT30575986Ipomoea trilobaOryza barthii62.1222.7882.9269forward
CNT3050899Ipomoea trilobaCucumis sativus28.4148.8182.93123forward

Expression of CNT30547527

Peptides detected in this lncRNA

>peptide 1 (32 aa)
QMSSYPNDQTRTVGKLALKWQPSEYQRTQMTR*

Sequence

>CNT30547527
CAGATGTCATCATATCCCAATGATCAAACACGCACTGTGGGAAAGCTTGCCCTGAAGTGGCAGCCCTCAGAGTACCAGAGAACCCAAATGACTCGATGAC
AGGAAGGTATGCCTTAATGTTATAAAGAGGGGTACCAGAGAACCCAAATGACTCGATGACAGGAAGGTATGCCTTAATGTTATAAAGAGGGGTACCAGGC
CTCTGAATCTCCTCAAACACGTGGCCACGTTTCTGATTCAAAACAGAATAGATACCACCAAGGGCTTGCTCTGGTGCTTGAATCTCAACCAAGTACACAG
GTTCCAAAAGACGGGGCTTGGCAGTAATCTGGGATGCATAGATAACCCTCCTGGCTGTAGGAATGACCTGGCCACCACCTCTGTGGATGGCATCAGCATG
GAGAACAACATCACAAACTTCAAAGCAGATACC