Detailed information on CNT30547471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640184Ipomoea trilobaNymphaea colorata37.7126.9585.78204forward
CNT30512774Ipomoea trilobaJuglans regia50.4621.8884.98273forward
CNT30372970Ipomoea trilobaArabidopsis thaliana39.194382.08212forward
CNT3019595Ipomoea trilobaCitrullus lanatus38.2637.380.68207forward
CNT3071371Ipomoea trilobaQuercus suber16.0830.3185.0687forward
CNT30636551Ipomoea trilobaCapsicum annuum35.4929.0985.94192forward
CNT30192963Ipomoea trilobaSecale cereale42.743.2682.25231forward
CNT30224330Ipomoea trilobaHordeum vulgare39.1943.8983.49212forward
CNT3085191Ipomoea trilobaVigna radiata23.6617.8587.5128forward
CNT30510528Ipomoea trilobaSolanum lycopersicum46.0319.3385.94249forward
CNT30143750Ipomoea trilobaMedicago truncatula39.3727.8185.92213forward
CNT30441049Ipomoea trilobaAegilops tauschii51.0273.0281.88276forward
CNT30665536Ipomoea trilobaTriticum dicoccoides39.1932.1783.49212forward
CNT30263748Ipomoea trilobaBrassica rapa51.5738.3882.8279forward
CNT30361949Ipomoea trilobaSorghum bicolor45.4729.1580.08246forward
CNT30706279Ipomoea trilobaPrunus avium41.5937.0782.67225forward
CNT3024028Ipomoea trilobaPopulus trichocarpa41.5930.4583.56225forward
CNT30119815Ipomoea trilobaCitrus clementina50.4659.4886.08273forward

Expression of CNT30547471

Peptides detected in this lncRNA

>peptide 1 (42 aa)
HIDHQEAPHTSSQHGISEPCQVMGGDISSFQEVHYLLATMSA*

>peptide 2 (32 aa)
MTRFISALPINSFSSDFIVTPSFCNIGHSLSF*

>peptide 3 (32 aa)
MTRFISALPINSFSSDFIVTPSFCNIGHSLSF*

Sequence

>CNT30547471
GGCATATTGATCATCAAGAGGCCCCTCATACAAGTTCTCAACACGGTATTTCTGAGCCTTGCCAGGTGATGGGAGGTGATATATCATCATTTCAAGAAGT
GCATTACTTGCTGGCAACCATGTCTGCATGACACGTTTCATCAGTGCCTTGCCCATTAATTCCTTCTCTTCAGATTTCATAGTGACACCAAGTTTCTGCA
ACATCGGCCACAGCTTATCTTTCTGATCATTCATACAGGTGTTAATGATCTGCTTAATGGGTGATGGGAGGTGATATATCATCATTTCAAGAAGTGCATT
ACTTGCTGGCAACCATGTCTGCATGACACGTTTCATCAGTGCCTTGCCCATCAATTCCTTCTCTTCAGATTTCATAGTGACACCAAGTTTCTGCAACATC
GGCCACAGCTTATCTTTCTGATCATTCATACAGGTGGCAATGATCTGCTTAATGGGTTCATAACAGAACTGCACAAACCCACGCTTGCATGTGGCAGACC
CATTGTGCTTGCTTGTCCACTTCTTTGTAGCAGGGTCAAAG