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Detailed information on CNT30547448


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-117

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30506303Ipomoea trilobaNicotiana attenuata60.6151.4188.1420forward
CNT3096706Ipomoea trilobaSolanum tuberosum64.7943.4287.53449forward
CNT30174754Ipomoea trilobaVigna angularis72.5859.6787.67503forward

Expression of CNT30547448

Peptides detected in this lncRNA

>peptide 1 (41 aa)
SIVSELSTSRVIVLPVRVLTKICMPPLKRSTKWRVDSFWML*

>peptide 2 (70 aa)
VNCVGAFHLEGDCLAGKGLDKDLHASPQTEHQMEGGFLLDVVICQGTAILKLLSGKDQPLLWRVDSFWML*

>peptide 3 (40 aa)
MVSELSTSRVIVFPVRVLTKICIPPLRRSTKWRVDSFWIL*

>peptide 4 (40 aa)
MVSELSTSRVMVLPVRVFTKICIPPLRRSTKWSVDSFWIL*

Sequence

>CNT30547448
TGTCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCATGCCTCCCCTCAAACGGAGCACCAAATG
GAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGTGGAGAGTGGATTCCT
TCTGGATGTTGTAATCGGCCAGGGTACGGCCATCCTCAAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCTTGGAT
CTTGGCCTTGACGTTGTCAATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATCCCACCCCTGAGA
CGGAGCACCAAGTGGAGTGTTGACTCCTTCTGGATATTGTAATCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGT
CTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATTGTCTTTCCGGTGAGGGTTTT
GACGAAGATCTGCATCCCACCCCTGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGGCCGTCCTC