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Detailed information on CNT30547410


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 4e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373037Ipomoea trilobaArabidopsis thaliana39.9210.4187.74212forward
CNT3071370Ipomoea trilobaQuercus suber19.2141.4685.29102forward
CNT30312952Ipomoea trilobaCamelina sativa45.9524.1386.48244forward
CNT30612508Ipomoea trilobaArabis alpina39.368.2384.21209forward
CNT30446140Ipomoea trilobaSaccharum spontaneum54.0523.3981.18287forward
CNT301916Ipomoea trilobaZea mays31.4541.0381.44167forward
CNT30212259Ipomoea trilobaHelianthus annuus38.7930.8883.5206forward
CNT30716253Ipomoea trilobaMalus domestica golden44.4417.888.14236forward
CNT30361348Ipomoea trilobaSorghum bicolor41.6242.0282.81221forward
CNT3054398Ipomoea trilobaAmborella trichopoda27.1220.9981.94144forward
CNT30557952Ipomoea trilobaPanicum hallii34.2722.3382.97182forward

Expression of CNT30547410

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSSLSLDTNPFNAVNHHKGSISNTERSCHF*

>peptide 2 (78 aa)
MQSTTTRAPSVIRSAAVTSDEKSTCPVSVWTQTPSMQSTTTRAPSVIRSAAVTSDEKSTCPGESIRLMRYSFPSRSPL*

Sequence

>CNT30547410
ATAACATTAGCATTCTCAATCACCCTTGAGAATGTCTGGTAAGCTTCTTCTCCATCAACTTGGAGCTCAAGGAAGCACCTGTCCATCTTGTTAACAGTCA
AGACAGGGCGAATCCTTTCACCCAGTGCTTGACGAAGTACAGTCTCAGTCTGGACACAAACCCCTTCAATGCAGTCAACCACCACAAGGGCTCCATCAGT
AATACGGAGCGCAGCTGTCACTTCTGATGAGAAGTCAACATGTCCAGTCTCAGTCTGGACACAAACCCCTTCAATGCAGTCAACCACCACAAGGGCTCCA
TCAGTAATACGGAGCGCAGCTGTCACTTCTGATGAGAAGTCAACATGTCCAGGTGAGTCAATAAGGTTGATGAGATACTCATTCCCGTCACGCTCACCCT
TGTAATTCTTCATTTCTTCAGCTGACATCTCATAGTACAGAGAAATTCCAGTGGACTTGATTGTAATACCACGTTCAGCTTCATCTGCACGGGTATCTGT
CATTCTAACATCACCAGCAACTTCTTGGGCA