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Detailed information on CNT30547292


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30164510Ipomoea trilobaPistacia vera28.4519.2789.69194forward

Expression of CNT30547292

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MVSELSTSRVIVFPVRVLTKICICTNPNFLQITQKLKSKFHYTIIDSIPIFPPKNHQILQSETERTPQIFKRERTIQQYTKF*

>peptide 2 (74 aa)
LNLKSNGFSSEGLHEDLHSTAEPEHQVKSGFLLDVVIGEGTAVLELFSGEDKSLLIWGDSFLVLDLGLDIINCV*

>peptide 3 (64 aa)
MVLPVRGGLLLDVVIGEGTAVLELFSGEDKPLLVRGDSFLVLDLGLDVVNGVGTLHLEGDSLSG*

Sequence

>CNT30547292
TCTCAACCTCAAGAGTAATGGTTTTTCCAGTGAGGGTCTTCACGAAGATCTGCATTCCACCGCGGAGCCTGAGCACCAAGTGAAGAGTGGATTCCTTCTG
GATGTTGTAATCGGCGAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATAAGTCTCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTG
GCCTTGACATTATCAATTGTGTCTGAGCTTTCAACCTCCAGAGTGATGGTCTTGCCGGTTAGGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTA
CGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGT
CGGAACTCTCCACCTCGAGGGTGATAGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCATCTGCACAAATCCAAACTTTCTTCAGATCACACAAAAACT
CAAATCAAAATTTCACTACACAATTATAGATTCAATTCCAATCTTTCCCCCAAAAAATCACCAGATTTTACAATCAGAAACAGAAAGAACACCGCAAATC
TTCAAAAGAGAACGAACAATACAACAATATACAAAATTTTAAAAACTTTAAAAATAAAAATTAAAGGAGAAATCAATACCTT