Detailed information on CNT30547200


BLAST search results

BLAST vs Swiss-Prot:
sp|F4HQ23|LRL27_ARATH, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3098801Ipomoea trilobaSolanum tuberosum50.961.9884225forward
CNT3085819Ipomoea trilobaVigna radiata34.1611.5280.13151forward

Expression of CNT30547200

Peptides detected in this lncRNA

>peptide 1 (57 aa)
SISTTLLIEGLGIGLVWMHQSPTIVIFFVILFSSSSSSPISIALRLLISLYIQDGKY*

>peptide 2 (57 aa)
MAPMLLLINSGATYPIVPRAAVSVTMLLSVGNSFARPKSEIFGMKFSSRSILCGLMSK

Sequence

>CNT30547200
AAGCATTTCAACCACCCTACTCATTGAAGGCCTTGGAATTGGACTGGTTTGGATGCACCAAAGCCCAACTATCGTCATCTTCTTTGTAATTCTCTTCTCA
TCCTCATCTAGTTCACCCATCTCAATTGCCTTGCGCTTGTTGATATCCTTGTATATCCAAGACGGGAAGTATTGACTCGATTCATCTTGCCCAGTAACTG
GGGTTTTCTTTAGGCCTAACATTTCCATCAGTAGCATTCCAAAGCTATAAACATCGGCTTTGTGTGAAATGGCTCCAATGCTTCTGTTGATCAACTCTGG
TGCCACATACCCAATTGTTCCACGGGCTGCTGTAAGCGTTACAATGCTTTTATCGGTAGGAAATAGTTTTGCGAGACCAAAATCAGAGATTTTTGGAATG
AAGTTCTCATCTAGAAGTATATTGTGCGGTTTGATGTCAAAA