Detailed information on CNT30546900


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 1e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375732Ipomoea trilobaArabidopsis thaliana27.616.3382.88146forward
CNT3090378Ipomoea trilobaSolanum tuberosum31.7642.5379.76168forward
CNT30542045Ipomoea trilobaBrassica napus19.092084.16101forward
CNT3078186Ipomoea trilobaBrassica juncea27.626.9482.88146forward
CNT30650912Ipomoea trilobaRosa chinensis31.7623.1482.74168forward
CNT30626852Ipomoea trilobaDaucus carota30.4318.5980.75161forward
CNT3037096Ipomoea trilobaCucumis melo21.1740.4387.5112forward

Expression of CNT30546900

Peptides detected in this lncRNA

>peptide 1 (31 aa)
TYNTPKGNHKYLVIQTIRMIKVRCRTPGAAA*

>peptide 2 (92 aa)
MVAVRRSHRVVRRRAGAFLRAVIPAAAWLGRRRRRRRREVELGLLATDASGCHVIRPGRFLRRVERPQPHSNPFLRVANLRRPFPPRPLPDSS

Sequence

>CNT30546900
GTACATACAACACTCCAAAAGGAAATCACAAATATTTAGTCATACAAACAATACGTATGATCAAGGTACGGTGTAGAACACCTGGTGCTGCTGCGTAGCA
CCAAAACATTCCTCCACGGGGCCCACCAGGAAAGGATCAAACGAGTCGAACTGGGCACCGGTCCCACCCAACTGAGTCGGCTCGGGTTCCAGCCCGAGGA
ACGATTCCAAGTCTGATATCTGAGCCTTAAGCTCGGATCCGCCCTGGTTATGGTGGCCGTCCGCCGCTCCCACCGGGTAGTACGGCGGCGAGCCGGAGCT
TTCCTGAGGGCTGTGATCCCTGCCGCAGCTTGGCTTGGTCGCCGGAGACGGCGGCGGAGACGGGAAGTTGAGCTTGGCCTTCTTGCCACGGATGCGAGTG
GCTGCCACGTCATACGCCCTGGCCGCTTCCTCCGCCGTGTTGAACGTCCCCAGCCACACTCTAACCCCTTTCTGAGGGTCGCGAATCTCCGCCGCCCATT
TCCCCCACGGCCTCTGCCGGATTCCTCTG