Detailed information on CNT30546718


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515731Ipomoea trilobaJuglans regia98.5161.6183.14528forward
CNT30406245Ipomoea trilobaBeta vulgaris94.477.6184.78506forward
CNT30505570Ipomoea trilobaNicotiana attenuata73.1320.7385.46392forward
CNT30637534Ipomoea trilobaCapsicum annuum100.1969.5685.47537forward

Expression of CNT30546718

Peptides detected in this lncRNA

>peptide 1 (53 aa)
NSFLILNLSLHIVNGIRALNFKSDGLASKIFTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (55 aa)
MVSELSTSRVMVLPVRFSQRSACHHADGGQDGGWTLFGCCSLLEYGHLQVAFQQK*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVSVLTKICIPPRRRRTRWRVDSFWIL*

Sequence

>CNT30546718
GGAATTCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACTTCAAGAGTGATGGTCTTGCCAGTAAGATTTTCACAAA
GATCTGCATGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAGTCTGCTAGAGTACGGCCATCTTCAAGTTGCTTTCCA
GCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGAGTGA
TGGTCTTGCCAGTTAGTGTTTTGACAAAGATCTGCATACCACCACGCAGACGAAGAACAAGGTGGAGGGTAGACTCCTTTTGGATATTATAGTCTGCAAG
TGTACGGCCATCTTCAAGCTGCTTTCCCGCAAAAATCAGCCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTATCAATG
GTATCAGAACTCTCAACCTCGAGAGTAATAGTCTTT