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Detailed information on CNT30546681


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-52

BLAST vs NONCODE:
NONBNAT006984, E-value = 3e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677847Ipomoea trilobaSetaria viridis37.4535.9985.8176forward
CNT30523218Ipomoea trilobaSetaria italica50.8543.7782.85239forward
CNT30318271Ipomoea trilobaCorylus avellana66.1731.3580.71311forward
CNT30703567Ipomoea trilobaQuercus lobata61.757.4383.45290forward
CNT30375418Ipomoea trilobaArabidopsis thaliana24.6849.1586.21116forward
CNT30616210Ipomoea trilobaSesamum indicum57.8721.7483.82272forward
CNT3069058Ipomoea trilobaQuercus suber61.0632.880.84287forward
CNT30196946Ipomoea trilobaPisum sativum62.7741.280.68295forward
CNT30294032Ipomoea trilobaTriticum aestivum54.8948.1382.56258forward
CNT30221015Ipomoea trilobaHordeum vulgare40.6436.2482.2191forward
CNT30386576Ipomoea trilobaTriticum turgidum50.8540.7883.68239forward
CNT30565712Ipomoea trilobaActinidia chinensis32.3450.8482.89152forward
CNT30172567Ipomoea trilobaTrifolium pratense65.1144.8781.05306forward
CNT30437818Ipomoea trilobaAegilops tauschii54.8944.6482.56258forward
CNT30664208Ipomoea trilobaTriticum dicoccoides51.4948.1183.06242forward
CNT3082467Ipomoea trilobaBrassica juncea65.5342.9681.82308forward
CNT30261175Ipomoea trilobaBrassica rapa54.0453.8181.5254forward
CNT30611328Ipomoea trilobaArabis alpina24.0424.7884.96113forward
CNT30450830Ipomoea trilobaSaccharum spontaneum50.8528.8684.1239forward
CNT30229571Ipomoea trilobaAnanas comosus25.3228.8884.87119forward
CNT30211420Ipomoea trilobaHelianthus annuus49.5746.9882.83233forward
CNT30348363Ipomoea trilobaEragrostis tef51.4943.4582.64242forward
CNT30619612Ipomoea trilobaCajanus cajan25.1128.1683.05118forward
CNT30360323Ipomoea trilobaLactuca sativa47.666483.48224forward
CNT30370989Ipomoea trilobaOryza glumipatula47.6635.8482.59224forward
CNT30414711Ipomoea trilobaPapaver somniferum61.0630.0278.05287forward
CNT30645276Ipomoea trilobaCannabis sativa54.0447.0481.5254forward
CNT3052246Ipomoea trilobaAmborella trichopoda55.9621.8382.51263forward
CNT3024855Ipomoea trilobaPopulus trichocarpa63.450.7782.55298forward
CNT30325970Ipomoea trilobaAsparagus officinalis58.339.7181.75274forward
CNT30331117Ipomoea trilobaDioscorea rotundata58.328.9379.56274forward
CNT30101647Ipomoea trilobaOryza rufipogon51.4925.9783.06242forward
CNT30581397Ipomoea trilobaEchinochloa crusgalli33.6226.9286.08158forward
CNT3050826Ipomoea trilobaCucumis sativus25.5335.1984.17120forward

Expression of CNT30546681

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MKHSTTYLRRQYPTMSIYKKVSKKRAQPLLTVLIFLTARLITKTSTNDSAQNAQPPNP*

Sequence

>CNT30546681
ACATGAAGCATTCAACTACATACCTAAGAAGACAATACCCAACAATGAGTATTTACAAAAAAGTAAGTAAAAAAAGAGCCCAGCCATTGTTAACAGTTCT
AATTTTCTTGACAGCAAGACTCATAACAAAGACCAGTACAAACGATTCAGCCCAAAACGCTCAACCGCCGAACCCATAGAGAGTCCTACCCTGCCTTTTC
AGCGCATACACCACGTCCATGGCAGTAACCGTCTTACGGCGAGCGTGCTCAGTGTAGGTAACGGCATCCCTAATCACATTCTCCAGAAAGATCTTCAAAA
CGCCGCGAGTCTCCTCGTATATCAGCCCGCTGATACGCTTCACGCCGCCTCTACGGGCCAGCCTACGGATAGCCGGCTTGGTTATGCCCTGGATGTTATC
GCGGAGGACCTTCCTGTGACGCTTCGCTCCTCCCTTTCCCAATCCCTTGCCTCCTTTTCCCCGACCCGAC