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Detailed information on CNT30546615

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695037	Ipomoea triloba	Oryza sativa	34.57	12.14	86.02	93	forward
CNT30676770	Ipomoea triloba	Setaria viridis	34.2	43.6	85.87	92	forward
CNT30524031	Ipomoea triloba	Setaria italica	31.23	30.55	88.1	84	forward
CNT30517210	Ipomoea triloba	Juglans regia	26.02	10.89	85.71	70	forward
CNT30375565	Ipomoea triloba	Arabidopsis thaliana	21.93	23.89	88.14	59	forward
CNT3020673	Ipomoea triloba	Citrullus lanatus	45.72	11.57	86.18	123	forward
CNT30728378	Ipomoea triloba	Corchorus capsularis	42.38	9.07	87.72	114	forward
CNT3046104	Ipomoea triloba	Prunus dulcis	29.74	18.1	88.75	80	forward
CNT30288667	Ipomoea triloba	Triticum aestivum	43.49	15.16	85.47	117	forward
CNT30394052	Ipomoea triloba	Triticum turgidum	20.82	3.91	91.07	56	forward
CNT3085870	Ipomoea triloba	Vigna radiata	40.89	25.06	85.45	110	forward
CNT30552571	Ipomoea triloba	Oryza glaberrima	33.46	35.57	85.56	90	forward
CNT30435838	Ipomoea triloba	Aegilops tauschii	40.89	44.18	86.36	110	forward
CNT30254684	Ipomoea triloba	Avena sativa	29.74	35.56	85	80	forward
CNT30658930	Ipomoea triloba	Triticum dicoccoides	43.49	48.95	85.47	117	forward
CNT30612661	Ipomoea triloba	Arabis alpina	21.93	20.42	86.44	59	forward
CNT3013604	Ipomoea triloba	Zea mays	35.69	7.01	86.46	96	forward
CNT30227873	Ipomoea triloba	Ananas comosus	21.19	9.27	96.49	57	forward
CNT30680173	Ipomoea triloba	Triticum urartu	40.89	45.27	86.36	110	forward
CNT30479174	Ipomoea triloba	Arabidopsis halleri	21.93	11.07	88.14	59	forward
CNT30365858	Ipomoea triloba	Sorghum bicolor	33.46	24.86	87.78	90	forward
CNT3038708	Ipomoea triloba	Cucumis melo	33.09	6.77	88.76	89	forward
CNT30102682	Ipomoea triloba	Oryza rufipogon	35.69	21.05	85.42	96	forward
CNT30575194	Ipomoea triloba	Oryza barthii	20.82	27.32	91.07	56	forward
CNT30116009	Ipomoea triloba	Oryza nivara	33.46	11.06	85.56	90	forward
CNT30604398	Ipomoea triloba	Oryza punctata	35.69	4.06	84.38	96	forward
CNT30112149	Ipomoea triloba	Ficus carica	20.82	7.13	91.07	56	forward
CNT3050414	Ipomoea triloba	Cucumis sativus	45.72	12.75	84.55	123	forward

Expression of CNT30546615

Peptides detected in this lncRNA

>peptide 1 (64 aa)
YRDMGVSGVTLGISGGEDGVNKNKGADNLGAEAVAFGVSGLYNVFPNPFTTPAPQIAPRHCITM*

>peptide 2 (88 aa)
QGHGSLWRYAWHQWRRRRCKQEQRCRQSRRRGRRLWCIRVVQRLSEPLHDAGAADRPQTLHHNVVNQPSQRHFPRQKQPERHRRINMPP

Sequence

>CNT30546615
TACAGGGACATGGGAGTCTCTGGCGTTACGCTTGGCATCAGTGGCGGAGAAGACGGTGTAAACAAGAACAAAGGTGCCGACAATCTCGGCGCCGAGGCCG
TCGCCTTTGGTGTATCCGGGTTGTACAACGTCTTTCCGAACCCCTTCACGACGCCGGCGCCGCAGATCGCCCCCAGACACTGCATCACAATGTAGTAAAC
CAACCTAGTCAACGACACTTTCCTCGCCAGAAACAGCCCGAACGTCACCGCCGGATTAATATGCCCCCC