Detailed information on CNT30546427


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 4e-37

BLAST vs NONCODE:
NONTPRT000749, E-value = 8e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695440Ipomoea trilobaOryza sativa21.37.482.6192forward
CNT30616300Ipomoea trilobaSesamum indicum63.1918.8883.88273forward
CNT30728471Ipomoea trilobaCorchorus capsularis27.557.8781.51119forward
CNT30160456Ipomoea trilobaPistacia vera29.6310.9483.59128forward
CNT30588133Ipomoea trilobaMusa acuminata31.2516.7782.96135forward
CNT30511436Ipomoea trilobaSolanum lycopersicum20.839.5483.3390forward
CNT30173347Ipomoea trilobaTrifolium pratense45.1427.4679.49195forward
CNT30228849Ipomoea trilobaAnanas comosus22.697.8583.6798forward
CNT30654380Ipomoea trilobaRosa chinensis30.561182.58132forward
CNT30330081Ipomoea trilobaDioscorea rotundata20.8322.1784.4490forward

Expression of CNT30546427

Peptides detected in this lncRNA

>peptide 1 (75 aa)
GVRRRHSRLHLHIHHPRLQHVHRIRYHRRHEPGGETRRHVGPQPVLHDSLFENRFLKLVVGCQLASRDEHGAVDG*

>peptide 2 (59 aa)
AYGGAIPGSTFIFIILVFNTSTGFVTTAATNPAAKLAVTWVPSPSFMIPFSRIVSLNWS*

>peptide 3 (73 aa)
MARLTVREEPRHKLVTPSFLVIWPAACYSFSGRSTSASSCRTAPSGSSNTASAGAPSPTRRKTGRPSLPVARSS

>peptide 4 (48 aa)
MLFVFGSLHFCFIMSYSPIRVVEYSVCRSTVADTPENRAAIPSCCTILT

>peptide 5 (46 aa)
RTAAPFPAPPSYSSSSSSTRPPDSLPPPPRTRRRNSPSRGSPARPS*

Sequence

>CNT30546427
GGCGTACGGCGGCGCCATTCCCGGCTCCACCTTCATATTCATCATCCTCGTCTTCAACACGTCCACCGGATTCGTTACCACCGCCGCCACGAACCCGGCG
GCGAAACTCGCCGTCACGTGGGTCCCCAGCCCGTCCTTCATGATTCCCTTTTCGAGAATCGTTTCCTTAAACTGGTCGTAGGATGCCAGCTGGCTAGCCG
TGACGAGCATGGCGCGGTTGACGGTTAGAGAGGAGCCGCGCCACAAGCTGGTGACGCCCTCGTTTTTGGTCATTTGGCCAGCGGCATGTTATTCGTTTTC
GGGTCGCTCCACTTCTGCTTCATCATGTCGTACAGCCCCATCCGGGTCGTCGAATACAGCGTCTGCCGGAGCACCGTCGCCGACACGCCGGAAAACAGGG
CGGCCATCCCTTCCTGTTGCACGATCCTCACC