Detailed information on CNT30546134


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380449Ipomoea trilobaManihot esculenta81.7367.6282.63662forward
CNT30490421Ipomoea trilobaOlea europaea82.141.0783.76665forward
CNT30506305Ipomoea trilobaNicotiana attenuata83.5871.7985.08677forward
CNT3044338Ipomoea trilobaPrunus dulcis81.9863.0684.94664forward
CNT3094880Ipomoea trilobaSolanum tuberosum71.1173.5685.76576forward
CNT30217432Ipomoea trilobaKalanchoe fedtschenkoi80.9965.8685.06656forward
CNT30113924Ipomoea trilobaFicus carica78.8960.485.29639forward

Expression of CNT30546134

Peptides detected in this lncRNA

>peptide 1 (63 aa)
SKLNFNYSLFLILEPPKQTHKTSQDRHIQRPNRTTDDNHGNEAIQKPPRRRRTRCRVDSFWML*

>peptide 2 (73 aa)
MTTMAMKQFRNPHGDGGQGAEWTPSGCYSRPESFHLQAVFRQRSTSAGPEGCLPCPGSSPSHCQSYPSFPPPG*

>peptide 3 (44 aa)
MPSLSWIFAFTLSIVSELSTSRVMVFPVRVFTKICIPPRSLSTK*

>peptide 4 (60 aa)
MKSGLLLDIVIGEGTTVLELLPGEDQPLLVRRDALLILNFGLDVVDGVGTLDLESNCLAG*

>peptide 5 (31 aa)
MVSELSTSKVIVLPVRVLTKICIPPLNRRTK*

Sequence

>CNT30546134
CAGCAAATTAAATTTCAATTATTCACTTTTCTTGATTCTTGAACCACCAAAACAGACTCACAAGACATCACAAGACAGACACATTCAAAGGCCAAACAGA
ACAACAGATGACAACCATGGCAATGAAGCAATTCAGAAACCCCCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTATAGTCGGCCA
GAGTCCTTCCATCTTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAAT
CGTATCCGAGCTTTCCACCTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATTCCTCCACGGAGCCTGAGCACCAAGTGAAGGGTT
GATTCCTTCTGAATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGT
CCTGGATCTTAGCCTTCACGTTGTCTATGGTGTCGGAGCTTTCAACCTCCAAGGTAATCGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCATCCCTCC
CCTCAATCGGAGAACCAAATGAAGAGTGGACTCCTTCTGGATATTGTAATCGGCGAGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTC
TGCTGGTCCGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTAATTGTCTTGCCGGTTA
GGGTTTTCAC