Detailed information on CNT30546130


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SDM1|CB121_HORVU, E-value = 3e-27

BLAST vs NONCODE:
NONATHT002466, E-value = 4e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375125Ipomoea trilobaArabidopsis thaliana31.8614.2589.2365forward
CNT30405492Ipomoea trilobaBeta vulgaris46.5739.9284.2195forward
CNT30629770Ipomoea trilobaVigna unguiculata58.3349.5883.19119forward
CNT30399429Ipomoea trilobaTriticum turgidum36.2719.2785.1474forward
CNT30171605Ipomoea trilobaTrifolium pratense53.928.7884.55110forward
CNT30612587Ipomoea trilobaArabis alpina31.8618.0187.6965forward
CNT30346386Ipomoea trilobaEragrostis tef62.2518.1983.46127forward
CNT30478064Ipomoea trilobaArabidopsis halleri22.5514.5691.346forward
CNT30370487Ipomoea trilobaOryza glumipatula46.089.8382.9894forward
CNT30580134Ipomoea trilobaEchinochloa crusgalli58.3328.6182.35119forward
CNT30497042Ipomoea trilobaDigitaria exilis62.2515.9783.46127forward
CNT30551312Ipomoea trilobaOryza brachyantha51.9610.0484.91106forward

Expression of CNT30546130

Peptides detected in this lncRNA

>peptide 1 (67 aa)
LVIFFSSSNMELTYQIGGNISRDKNVSDVVVPWIRQVTRQILQRSCSWVRRLLNADSHECQQRKPTCS

>peptide 2 (35 aa)
MDPPSDSPNSPAVLFLGTPTAERRFPRMPTTQADLF

Sequence

>CNT30546130
CTAGTTATCTTTTTCTCTAGTAGTAACATGGAGCTCACATATCAAATTGGGGGAAACATTTCTAGGGATAAGAATGTCTCCGATGTTGTTGTGCCATGGA
TCCGCCAAGTGACTCGCCAAATTCTCCAGCGGTCCTGTTCCTGGGTACGCCGACTGCTGAACGCAGATTCCCACGAATGCCAACAACGCAAGCCGACCTG
TTCA