« Back to Ipomoea triloba search


Detailed information on CNT30546122


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 4e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616186Ipomoea trilobaSesamum indicum49.1574.8984.97173forward
CNT30555939Ipomoea trilobaOryza glaberrima54.5549.2382.81192forward
CNT30146667Ipomoea trilobaMedicago truncatula21.0226.2486.4974forward
CNT30440942Ipomoea trilobaAegilops tauschii2540.5589.7788forward
CNT30312036Ipomoea trilobaCamelina sativa19.621.0486.9669forward
CNT30721746Ipomoea trilobaTriticum spelta26.145.7290.2292forward
CNT30338628Ipomoea trilobaEragrostis tef2524.7992.0588forward
CNT30367313Ipomoea trilobaSorghum bicolor2515.4992.0588forward
CNT30646608Ipomoea trilobaCannabis sativa57.143.1384.08201forward
CNT30104724Ipomoea trilobaOryza rufipogon27.849.3986.7398forward
CNT30578591Ipomoea trilobaOryza barthii51.9911.5984.15183forward
CNT30117466Ipomoea trilobaOryza nivara54.5517.1982.81192forward
CNT30725849Ipomoea trilobaLupinus angustifolius21.5923.9786.8476reverse complement

Expression of CNT30546122

Peptides detected in this lncRNA

>peptide 1 (83 aa)
RAPSEDTAVTDLVLDIANDGTFRDRSERQNVADDEVSLLTAVDELAGVHALGGDEKLLLVLEAEGVTEGSGSGRGPCGGGCGT*

>peptide 2 (41 aa)
EHLAKTPRSPTLCSTLQTTAPSGIDLRGRTLPTMRLAFLPQ*

Sequence

>CNT30546122
AGAGCACCTAGCGAAGACACCGCGGTCACCGACCTTGTGCTCGACATTGCAAACGACGGCACCTTCAGGGATAGATCTGAGAGGCAGAACGTTGCCGACG
ATGAGGTTAGCCTTCTTACCGCAGTAGACGAACTGGCCGGTGTACATGCCCTCGGCGGCGACGAAAAGCTCCTTCTGGTGCTGGAAGCGGAAGGGGTGAC
GGAAGGGAGCGGAAGCGGGCGGGGCCCTTGCGGTGGTGGGTGTGGGACTTGAAAACCGATCCGGCACCCTTACGTTGAGCTCTGATCACTCGTCCCATCT
CGGAGAGAAGGTTGCTAGGGCAGAGAGTTGAGAGGGATGGAAATGCTATGAG