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Detailed information on CNT30545885


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316655Ipomoea trilobaCorylus avellana60.3586.9890.51274forward
CNT30518728Ipomoea trilobaJuglans regia55.7343.2588.93253forward
CNT30628786Ipomoea trilobaVigna unguiculata55.9551.8490.94254forward
CNT30220676Ipomoea trilobaHordeum vulgare55.9545.1290.94254forward
CNT30586129Ipomoea trilobaMusa acuminata48.941.7389.64222forward
CNT3067544Ipomoea trilobaLeersia perrieri55.2915.2691.63251forward
CNT30720110Ipomoea trilobaTriticum spelta57.2741.1491.15260forward
CNT30368046Ipomoea trilobaSorghum bicolor55.2941.1591.24251forward
CNT30356771Ipomoea trilobaLactuca sativa55.9523.4887.01254forward
CNT30369422Ipomoea trilobaOryza glumipatula55.2919.1992.03251forward
CNT30571087Ipomoea trilobaVitis vinifera47.3632.4389.77215forward

Expression of CNT30545885

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSRVIVFPVRVFTKICIFASRLV

>peptide 2 (79 aa)
SKPKYSRKIGFGKKTKEFQNLIQNHRCPSRSQIIQRIHNEMKVEVWRKKSISHRRPSDRHRSSSCASLPRRGGEGRGGG*

Sequence

>CNT30545885
ATCAAAACCAAAATATAGCAGGAAAATAGGATTTGGAAAAAAAACCAAAGAGTTTCAAAACTTAATCCAAAACCATAGATGTCCATCAAGGTCTCAAATT
ATACAAAGGATTCATAATGAAATGAAAGTAGAAGTTTGGCGAAAGAAAAGTATCAGTCACCGCCGGCCTTCTGATAGACATAGGTCTTCTTCTTGCGCTT
CTTTGCCCCGCCGCGGAGGCGAAGGACGAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG
AAGATGAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCCGATGACTCCACCTCTAGGGTTATCG
TCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATTTTCGCGTCGCGTCTCGTCT