Detailed information on CNT30545324


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532002Brassica napusEucalyptus grandis98.146.5893.61703reverse complement
CNT30550233Brassica napusIpomoea triloba100.2961.7693.81741reverse complement
CNT30507933Brassica napusNicotiana attenuata100.2985.6493.911741reverse complement
CNT30711221Brassica napusGlycine max78.8100.1594.371368reverse complement
CNT30163337Brassica napusPistacia vera79.7210092.271384reverse complement
CNT30311297Brassica napusCamelina sativa100.0686.2595.051737reverse complement
CNT30355986Brassica napusLactuca sativa85.7154.5190.991488reverse complement

Expression of CNT30545324

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHRTPRDVRCSSSRWTRPPAEKFPGWAGC*

>peptide 2 (29 aa)
MNAWLPQASYPCGNFSDTSSFKFRRSKGS*

>peptide 3 (53 aa)
MSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPDLRLRSFQGGQAVKQKR*

>peptide 4 (66 aa)
LANDTCLWEPKLLLRVGNRAAGACVASSLDFDVEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY*

>peptide 5 (80 aa)
MCRPSQTPHLTMSSARIDPPKRVLGLKEGVVTPPPIHGVSKITLKVVFFHLRRSSHLFYTSQVISQSRTRVKLNRVFFPR*

Sequence

>CNT30545324
CTTAGCCAACGACACGTGCCTTTGGGAGCCGAAGCTCCTACTGAGGGTCGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCTGGATTTTGACGTA
GAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACT
AGGTTGAATTACTATTGGGACGCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAA
TCCAACACTTGGTGAATTCTGCTTCACAATGATATGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT
TATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGATCTAAAGGATCGTAGGCTACGCTTTCACGGTTTGTATTCGTACTGAAAATCA
GAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCC
CAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATCGACCCGCCGAAGCGAGTCTTGGGTCTAAAAGAAGGGGTTGTTACCCCGCCTCCGATTCAC
GGAGTAAGTAAAATAACGTTAAAAGTAGTGTTTTTTCACTTGCGCCGGAGCTCCCACTTATTCTACACCTCCCAAGTCATTTCCCAAAGTCGGACTAGAG
TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTT
AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT
TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAAGGACCATCGCGATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTT
GTCCGTACCAGTTCTGAGTTGGCTGTTCGACGCCCGGGGAAAGCTCCCGAAAGAGCCGTTCCCAGTCCGTCCCCCGGCCGACACGAGGCGGTCCGCTCTC
GCCACGTTAGCGGCTCAAGCAGCCCGCCAACAGTCGACGGGTTCGGAACTGGGACCCCCGATCCCAGCCCTCAGAGCCAATCCTTTTCCCGAACTTACGG
ATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGCGG
CACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCGACCTCCGGCTGAGAA
GTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACATCTCCGGACTCCCTAACGTTGCCGTTAACCGCCACGTC
CCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAA
GTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCT