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Detailed information on CNT30544956


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3079106Brassica napusBrassica juncea6.7723.9795.3164forward
CNT30214058Brassica napusHelianthus annuus7.8228.0395.9574reverse complement
CNT30107453Brassica napusOryza longistaminata8.1429.0693.5177forward
CNT3035140Brassica napusCucumis melo7.8230.0894.5974forward

Expression of CNT30544956

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MMLLYNHNSVIIYLLANISETRNLNIFLFLYNSFSVMIFCQTFTVIKY*

>peptide 2 (33 aa)
MRQLRLIPVPRSKGHADERVFTLFFFLFLCFAK*

>peptide 3 (37 aa)
MMTTDPITLFVMQHIQFVYQKLLVTNVKKNHLISTVR*

Sequence

>CNT30544956
AGAAAATGAAATAAACGAAAATCTGACGATATATATAAACTCTTAAACTAACTAAGGTAATTCCTTGGTAATCAATAGTTTTTACTCAAAAGCAATATAC
ATTTACATTTTAAAAAAATCGCCCACCGTGGAACGCGAACCCACGACCACAAGGTTAAGAGCCTTGCGCTCTACCAACTGAGCTAGACGGGCATTTGATG
ATGCTTCTATATAACCATAATTCGGTCATCATTTATTTATTGGCAAACATCTCAGAAACTCGAAATTTGAACATATTTTTATTTCTGTATAACAGTTTTA
GTGTTATGATTTTCTGTCAGACATTCACTGTAATTAAGTATTAGTTCATTACCATATGCAAAACAACTATATGTATATCAAAGTAATTATTTTCCAGACA
CTGGATGGGCAGCACTATTAAGTTCCTTTGGAGCTGTCCCAGAATCTTCAAGATCGAGATTTAATGGTTCTTGTTTGGTTACTTGTGTCGGCTTATCCTT
GCTTTTGCCCCATAAAAGTATATAAAGTCCCACGATGATGACCACTGATCCTATCACACTTTTTGTCATGCAACATATACAGTTCGTGTATCAAAAACTA
TTAGTAACAAATGTCAAAAAGAACCACTTGATATCTACCGTACGTTAGGCGAAAGAAACCCATAAAATTAGGTGTCCTTCTTGTGTAATCATTTCTCATA
TTTGATCTCAATCTCCACTTCGATAAAAGGTATTTATCACAGATATTAAAGGTCTGGATAAGTTTCAATGATATTCTACCAAGTTAATGATTTTTTTTTT
GTTATGCAATATGATGCATGCGTCAACTTCGTCTAATTCCAGTTCCACGTTCAAAAGGTCACGCAGATGAAAGGGTCTTTACTCTTTTTTTTTTTCTTTT
TCTTTGTTTTGCCAAATAGGGTCTTTACTCTTTAGTATAGACATAT