Detailed information on CNT30544951


BLAST search results

BLAST vs Swiss-Prot:
sp|Q04050|NU4M_BRACM, E-value = 2e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Brassica napusArabidopsis thaliana45.774.1999.3287forward
CNT30501326Brassica napusCoffea canephora1005.9396.81627forward
CNT30226086Brassica napusHordeum vulgare100.3211.8494.28629forward
CNT30592637Brassica napusMusa acuminata11.821.0291.8974reverse complement
CNT30239040Brassica napusBrassica oleracea84.37100100529forward
CNT30688804Brassica napusTriticum urartu100.3216.9894.91629forward
CNT30482060Brassica napusChara braunii14.6725.6388.0492forward

Expression of CNT30544951

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKGVEQSVASGNMGIENLKNPWVPNFKGIPAKMTDPAVGAST*

Sequence

>CNT30544951
TTTCTCCCCCATTGCTAGTAGGTTGATGGGTCGCACGCCCGACACACATGTTTTGGCCTTGTGTGTCCATAACTCAAAATAGGTGACCTAACGGCCGCCG
CCCGACTAAACATACCAATAGTCACCAGATTCATATGGGCTACTGAGGAGTAAGCAATGATCTTCTTTAGATCGATCTGTCTTGAAGTGGTCAAGGAAGT
ATATATTATAGCAATCGCGCTTAAAGTATAAATGAAAGGAGTAGAACAAAGTGTCGCTTCGGGAAACATGGGTATTGAAAATCTTAAAAACCCGTGGGTT
CCAAATTTTAAAGGAATTCCTGCCAAGATGACGGATCCTGCCGTAGGTGCCTCTACATGAGCTTCGGGTAACCAAATATGAACTGGTACCATAGGCACTT
TGACGGCGAAAGAGGCGAAAGAAGCAATCCATAGAAAGATTTGGCGCCGCTCACTAAATTCTGTGGTTAATGATATTTGTAAATCGGTGGTTCCTGTTTG
GAAAAGAATCAACAGAATAGCTAATAGCATAAAAAGAGATCCAAGTAAAGTATAAAGGAAAAACTGATATGCTGCCTTGATCTTTCTTTGTCTCGAACCC
CATACTCCTATAATAATGGTAGAGTAA