Detailed information on CNT30544944


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30614256Brassica napusArabis alpina25.7443.2785.78225forward
CNT30477981Brassica napusArabidopsis halleri25.7423.4986.67225forward

Expression of CNT30544944

Peptides detected in this lncRNA

>peptide 1 (67 aa)
SSMTLLFFDPRETITRYSSQSSLYIDEAVGMLLSDHWFHFLRWVCVCSSSVQTVSAFWQSYNPSYPE*

>peptide 2 (54 aa)
MILVSLHILNLVVALVNAKWGNYVDFLGKLQTNCFFFNLILVYSGRKLARSDIF*

>peptide 3 (74 aa)
MKLWGCFLVIIGSISFVGFAFAALVSKLFPLSGNPIIQAIQNDRYYCFLAPLTLPALLVSVYFHWLTMKLFKHA*

>peptide 4 (34 aa)
MYSKGRKTVWLRDHFYLVTNFIREQTRVTEYSCF*

Sequence

>CNT30544944
GTCGTCAATGACGCTTCTCTTCTTCGACCCAAGGGAAACAATCACTCGATATTCCTCTCAATCGTCACTTTACATTGATGAAGCTGTGGGGATGCTTCTT
AGTGATCATTGGTTCCATTTCCTTCGTTGGGTTTGCGTTTGCAGCTCTAGTGTCCAAACTGTTTCCGCTTTCTGGCAATCCTATAATCCAAGCTATCCAG
AATGACAGGTACTACTGCTTCTTAGCCCCACTGACTCTACCAGCATTACTTGTTTCTGTCTACTTTCATTGGCTTACCATGAAGCTGTTCAAACACGCAT
GAGATTTATCATGGTATGATTTTGGTTTCCCTTCATATTCTGAATCTAGTTGTGGCATTAGTTAACGCAAAGTGGGGAAATTATGTTGATTTTCTGGGCA
AATTACAAACTAATTGTTTTTTTTTTAATTTAATATTAGTTTATAGTGGCAGAAAACTAGCTCGTAGTGACATATTTTAAAATTTGTAGTAATTTGGAAA
ACATATCTCTTAAAGGTTGGAATCATCATGTATTCTAAGGGTAGGAAAACTGTCTGGTTAAGGGATCATTTTTACTTGGTTACAAATTTCATTCGAGAAC
AGACAAGAGTCACAGAATATTCTTGTTTCTGAAAATTATCGTTAGAAGGAAATGGTAAATATAAAAGAAAAGAGAGTTAAAAAAGCTGGTTCAAGGTCAT
GTGCATAAAGGTTAAACTTTTGAAGGACTCTTTTGTCTCATATTTTGTGGCTTCATTATTTTATTGGTGAGTGGTTGGTTAATCCATGAAGTCGTATGCT
AGTGCATATGTCCTTCCTGGATCCATGTGAGTGCGTATGTCTAACTTATTTATTTTATATACGTATAATATAGT