Detailed information on CNT30544870


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30356368Brassica napusLactuca sativa96.1410094.281294reverse complement

Expression of CNT30544870

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 2 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTRGGSSQSASLRLTDLLTR*

>peptide 3 (95 aa)
GTLEPSPQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 4 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 5 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

>peptide 6 (57 aa)
MLTLEPFSEDQGRSAVHPWGIQPISFLAPYGFTHPLTRTHVRLLGPCFQTGRMGSPQA

>peptide 7 (42 aa)
GPLSPALRANPFPEVTDPFCRLPLPTLFHRPEAVHLGDLMRL*

Sequence

>CNT30544870
TGGGACCCTTGAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGC
TGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACC
ACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGA
ATTCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGC
GCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCAT
TTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCG
AGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCC
TTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGG
CTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCT
ACCTATTTAAAGTTTGAGAATAGGTCGAGGACATTGCGTCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCC
TGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCG
GGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAG
ATCAAGGTCGGTCGGCTGTGCACCCGTGGGGGATCCAGCCAATCAGCTTCCTTGCGCCTTACGGATTTACTCACCCGTTGACTCGCACACATGTCAGACT
CCTTGGTCCGTGTTTCCAGACGGGTCGAATGGGGAGCCCACAGGCC