Detailed information on CNT30544869


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730396Brassica napusCorchorus capsularis81.86100.1394.551597reverse complement
CNT3047192Brassica napusPrunus dulcis82.6847.5392.751613reverse complement

Expression of CNT30544869

Peptides detected in this lncRNA

>peptide 1 (92 aa)
EPSPQSQSFSRSYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 2 (39 aa)
SPALRANPFPEVTDPFCRLPLPTLFHRPEAVHLGDLMRL*

>peptide 3 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 4 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

>peptide 5 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

>peptide 6 (35 aa)
AQPSEPILFPKLRIHFADFPCLHCSIDQRLFTLET*

>peptide 7 (34 aa)
MGSPQADALSTQMPRHAVRRVLQTTIKAATSPRA*

>peptide 8 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

Sequence

>CNT30544869
GAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTT
GGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGCGACGTG
CGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCG
ACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGAC
GGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTT
GCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCT
CTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATT
TCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTC
ATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTATTTAA
AGTTTGAGAATAGGTCGAGGACATTGCGTCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGGGAAAC
TTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACC
AGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCG
GTCGGCTGTGCACCCGTGAGGGATCCAGCCAATCAGCTTCCTTACGCCTTACAGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCG
TGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACGCCCTGAGCACGCAGATGCCGAGGCACGCCGTGAGGCGCGTGCTGCAGACCACGATTAAGG
CAGCGACGTCTCCGCGGGCGTAACAAAAGCCCGGGCTTAGGTCACCACCTTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCC
GTTCCGCATCCGACCAGGACGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTT
ACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCATATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGT
AGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTCTGGCGCCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCGCTGAGGA
CGCTTCTCCAGACTACAATTCGAACGCCAAAGACATCCGATTTTCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTC
TTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGTGATCCCGCCTGACC