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Detailed information on CNT30544802


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 4e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525058Brassica napusPhaseolus vulgaris34.645.7486.44236forward
CNT30417231Brassica napusPapaver somniferum52.247.8582.3356forward
CNT30176337Brassica napusVigna angularis34.623.2788.14236forward

Expression of CNT30544802

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGRSCLLGKASPPLLPMVPLLRLCNPQQLP*

>peptide 2 (52 aa)
SVQFESSGKTPTQLKKRGSISDESYKDTTKEIAQIYIGKTTNKLLFLWLSLT*

>peptide 3 (88 aa)
MVGEILQRSLSSDNSLDKESKHREHSQPSVLDLLHLQLGESFWVGSETQWVEAASWVKQVLRFSQWSLSCDSVTLNSSHEDHLSSPNG*

Sequence

>CNT30544802
TTCAGTTCAGTTCGAGTCTTCAGGTAAAACACCAACACAGTTGAAAAAAAGAGGTTCGATTTCTGATGAATCATACAAAGATACGACAAAGGAAATTGCA
CAAATTTACATAGGAAAGACCACAAACAAACTTCTCTTTCTCTGGCTCTCACTCACATAAGCTTCACTTTCCGGGGACGAAGTTGGTGGCGAAGGCCCAT
GCGTTGTTGTTGACTGGATCAGCCAAATGGTCGGCGAGATTCTCCAACGGTCCCTTTCCAGTGACAATAGCCTGGACAAAGAATCCAAACATAGAGAACA
TAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGAAAGCTTCTGGGTCGGTAGCGAGACCCAATGGGTCGAAGCTGCCTCCTGGGTAAAG
CAAGTCCTCCGCTTCTCCCAATGGTCCCTCTCCTGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTC
TGAGCGTGGACCAAGCTCGGGTTGCCCAAGTAGTCGAGTCCTCCTTCACTGAAGATCTGTGAACCGGCCTTGAACCAAACCGCTTCTCCGAACTTGACTC
CGTTACGAGCCAAGAGCTCAGGGAAAACGCAGCCATTAGAACGTTTCTTCTTTTTTGTTGATTTTATGGGTTTTTTTTTGTG