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Detailed information on CNT30544747


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639740Brassica napusNymphaea colorata75.0556.9392.661922forward
CNT30530811Brassica napusEucalyptus grandis97.5873.7293.842499reverse complement
CNT30374695Brassica napusArabidopsis thaliana51.7442.4596.911325forward
CNT30619309Brassica napusSesamum indicum62.9173.3393.31611forward
CNT30283199Brassica napusChenopodium quinoa72.1667.9295.081848reverse complement
CNT3021659Brassica napusCitrullus lanatus98.5659.3294.142524reverse complement
CNT30632341Brassica napusVigna unguiculata98.5274.7192.982523reverse complement
CNT30195048Brassica napusPisum sativum98.2866.9293.092517reverse complement
CNT30508033Brassica napusNicotiana attenuata98.5675.891.842524reverse complement
CNT30711135Brassica napusGlycine max97.778.7593.532502reverse complement
CNT3047217Brassica napusPrunus dulcis73.5752.9492.891884reverse complement
CNT30234560Brassica napusBrassica oleracea66.389.0499.591698forward
CNT30312195Brassica napusCamelina sativa66.7368.5298.31709forward
CNT3076930Brassica napusBrassica juncea10074.5399.492561reverse complement
CNT30262562Brassica napusBrassica rapa94.0694.4399.172409forward
CNT30355977Brassica napusLactuca sativa59.787.3293.071529reverse complement
CNT30434075Brassica napusPapaver somniferum98.7994.2692.252530reverse complement
CNT3035495Brassica napusCucumis melo98.5947.9493.982525reverse complement
CNT30583181Brassica napusEchinochloa crusgalli72.5179.2291.981857reverse complement

Expression of CNT30544747

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAHLELSIPWDGSTKQPPRPTYLKFENRSRTLRPRCL*

>peptide 2 (34 aa)
MGSPQADALSTQMPRHAVRRVLQTTIKAATSPRA*

>peptide 3 (53 aa)
MSTTGRERHSVLRIFKGRRECTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 4 (42 aa)
VSKITLKVVVFHLRRSSHLFYTSQVISQSRTRVKLNRVFFPR*

>peptide 5 (29 aa)
MHRTPRDVRCSSSRWTLPPAEPFPGWAGC*

>peptide 6 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRPRSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

>peptide 7 (86 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIGRALQRHPFSGLVDSAGELLHTP*

Sequence

>CNT30544747
GTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGAGCTCCCACTTATTTTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA
AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGGACAGTGGGAATCTCGTTAA
TCCATTCATGCACGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTC
ACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATCCGCAGGGACCATCGCAATGCTTTGTTTTAATTAAACAGTCGGATTCCCCTTGT
CCGTACCAGTTCTGAGTTGGCTGTTCGACGCCCGGGGAAAGCTCCCGAAAGAGCCGTTCCCAGTCCGTCCCCCGGCCGACACGAGGCGGTCCGCTCTCGC
CACGTTAGCAGCTCAAGCAGCCCGCCAACAGTCGACGGGTTCGGAACTGGGACCCCCGAGCCCAGCCCTCAGAGCCAATCCTTTTCCCGAAGTTACGGAT
CCATTTTGCCGACTTCCCTTGCCTACATTGTTCCATCGACCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAGCGGCA
CTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGAATGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTGAGCCGT
TTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTTCCGGAATTCCCGCCGACGTCTCCGGACTCCCTAACGTTGCCGTCAACCGCCACGTCCC
GGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCATAAGCGCTATCAGACGGGTTTCCCCCGACTCTTAGGATCGACTAACCCATGTGCAAGT
GCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGG
CTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCAT
CCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACA
CCCTTTGTGGGTTCTAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGG
AGCTCTCGATTCCGTGGGATGGCTCAACAAAGCAGCCACCCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGACGTTGCGTCCCCGATGCCTCTA
ATCATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGC
CCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCCGGCCTCGTTCACCAT
CTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCTGTGCACCCGTGAGGGATCCAGCCAATCAGCTTCCTT
GCGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACGCCC
TGAGCACGCAGATGCCGAGGCACGCCGTGAGGCGCGTGCTGCAGACCACGATTAAGGCAGCGACGTCTCCGCGGGCGTAACAAAAGCCCGGGCTTAGGTC
ACCACCTTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCAGGACGCATCGCCGGCCCCCATCCGCTT
CCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCATATTTA
GCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGC
TCTCACCCTCTCTGGCGCCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAACGCCGAAGACGTCCGATTT
TCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTGATCC
CGCCTGACCTGGGGTCGCGTTGAGGACTTTGGGTCATCAAGAGCTTTTGGACCGGAACGTC