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Detailed information on CNT30544406


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640117Brassica napusNymphaea colorata91.0290.3895.871814reverse complement
CNT30318212Brassica napusCorylus avellana91.2267.6396.921818reverse complement
CNT30702609Brassica napusQuercus lobata90.7798.3296.631809forward
CNT30283192Brassica napusChenopodium quinoa91.0286.1396.971814reverse complement
CNT3021658Brassica napusCitrullus lanatus89.0610097.351775reverse complement
CNT30628671Brassica napusVigna unguiculata91.2262.297.141818reverse complement
CNT30200773Brassica napusPisum sativum91.0761.7897.021815forward
CNT3047196Brassica napusPrunus dulcis91.1776.0696.641817forward
CNT30638988Brassica napusCapsicum annuum90.1794.3397.331797reverse complement
CNT30309594Brassica napusCamelina sativa90.9793.8499.341813reverse complement
CNT3077257Brassica napusBrassica juncea95.5899.9599.741905forward
CNT30422282Brassica napusPapaver somniferum91.3257.6796.211820reverse complement
CNT3025914Brassica napusPopulus trichocarpa90.12100.1196.991796forward
CNT30326143Brassica napusAsparagus officinalis91.1758.9996.751817forward
CNT3036478Brassica napusCucumis melo89.1658.4597.191777forward

Expression of CNT30544406

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKYECPRLSLLIITPIPKANTIGSKSYDVIPC*

>peptide 2 (29 aa)
MKFQRLPGPVGQGVNSLNTSCSARAAQNI*

>peptide 3 (43 aa)
MIRFSGLLATSQTANHPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 4 (37 aa)
MFHRSQVVLFPGYDNDPSAGSPTETLLRLLLPLNDKV*

>peptide 5 (52 aa)
VISGSYAYDPTKTEVLAKDERITTESAGTVRNRPTESDVSSFSGRSVSRVRQ*

>peptide 6 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRIEIL*

>peptide 7 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

Sequence

>CNT30544406
GGTGATATCCGGAAGCTATGCGTACGATCCAACCAAAACTGAAGTCTTGGCCAAGGATGAACGCATAACCACGGAATCAGCAGGCACAGTAAGAAACCGG
CCTACCGAGAGTGATGTTTCATCGTTCTCAGGTCGTTCTGTTTCCAGGGTACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTT
CTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCGCGACGTCGCAGACGGCGAACCACCCACGTCGCCGCGATCCGAACACTTCACCGGATCATTCA
ATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAA
TTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATACATCATGTAGCGCGCGTGCGG
CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCCT
CCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA
ATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGG
TGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTAAAA
GCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAA
CATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATC
ATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAAT
TTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGTATCGCCGACAGAAGAGACAAGCCGACCGGTGCTCACCAAAGGCGG
ACCGGGCGACCCATCCCAAGGTTCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA
CTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCC
CGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCAC
CCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAG
TTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC
TAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTT
ACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCATAAATCAGGACAAGACCACGTCATAT