Detailed information on CNT30544402


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519047Brassica napusJuglans regia87.294.196.71819forward
CNT30506608Brassica napusNicotiana attenuata87.170.795.61817forward
CNT30261808Brassica napusBrassica rapa80.158099.881672forward
CNT30115247Brassica napusEutrema salsugineum87.39100.2298.791823forward

Expression of CNT30544402

Peptides detected in this lncRNA

>peptide 1 (52 aa)
VISGSYAYDPTKTEVLAKDERITTESAGTVRNRPTESDVSSFSGRSVSRVRQ*

>peptide 2 (55 aa)
MHPFQKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRIEIL*

>peptide 4 (50 aa)
MIYPHHDEISKITRACRPRCELVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 5 (43 aa)
MIRFSGLLATSQTANHPRRRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 6 (44 aa)
MTTGRINQVAFINQDKTTSYPRKHKESGNRHRLDRNLLSGDKRA*

>peptide 7 (32 aa)
MKYECPRLSLLIITPIPKANTIGSKSYDVIPC*

>peptide 8 (37 aa)
MFHRSQVVLFPGYDNDPSAGSPTETLLRLLLPLNDKV*

Sequence

>CNT30544402
GGTGATATCCGGAAGCTATGCGTACGATCCAACCAAAACTGAAGTCTTGGCCAAGGATGAACGCATAACCACGGAATCAGCAGGCACAGTAAGAAACCGG
CCTACCGAGAGTGATGTTTCATCGTTCTCAGGTCGTTCTGTTTCCAGGGTACGACAATGATCCTTCCGCAGGTTCACCTACGGAAACCTTGTTACGACTT
CTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCGCGACGTCGCAGACGGCGAACCACCCACGTCGCCGCGATCCGAACACTTCACCGGATCATTCA
ATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGTTGAAGACCAACAA
TTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATACATCAGTGTAGCGCGCGTGCG
GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCCGTGAAGGGATGCC
TCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG
AATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGATCAAATTAAGCCGCAGGCTCCACTCCTGGTGG
TGCCCTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAAACTTTGATTTCTCATAAGGTGCCAGCGGAGTCCTAAAA
GCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAA
CATCCTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATC
ATTACTCCGATCCCGAAGGCCAACACAATAGGATCGAAATCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAAT
TTCTTCAAAGTAACAGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGTATCGCCGACAGAAGAGACAAGCCGACCGGTGCTCACCAAAGGCGG
ACCGGGCGACCCATCCCAAGGTTCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA
CTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACTCAAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCC
CGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCAC
CCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACTAAGGCCATGCGATCCGTCGAG
TTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTC
TAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTT
ACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCATAAATCAGGACAAGACCACGTCATATCCCCGCA
AACACAAGGAAAGTGGGAACAGACACAGACTTGACCGTAATCTTTTGTCCGGAGACAAACGTGCTTAGCAGGACAGAATTTCTTCG