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Detailed information on CNT30544396


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698389Brassica napusQuercus lobata79.3464.0191.5941forward
CNT30500372Brassica napusCoffea canephora74.4582.689.47883reverse complement

Expression of CNT30544396

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGSPQADALSTQMPRHAVRRVLQTTIKAATSPRA*

>peptide 2 (33 aa)
MTRIKFTTACQDAPDVLSSDFGQPRAVTHGRPAS

>peptide 3 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRLCTREGSSQSASLRLTGLLTR*

Sequence

>CNT30544396
CCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGTTTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAACTACTAGATGGTTC
GATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCACTCAG
GCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCTGTGCACCCGTGAGGGATCCAGC
CAATCAGCTTCCTTGCGCCTTACGGGTTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCC
ACAGGCCGACGCCCTGAGCACGCAGATGCCGAGGCACGCCGTGAGGCGCGTGCTGCAGACCACGATTAAGGCAGCGACGTCTCCGCGGGCGTAACAAAAG
CCCGGGCTTAGGTCACCACCTTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCAGGACGCATCGCCG
GCCCCCATCCGCTTCCCTCCCGACAATTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCT
CTCGCCCATATTTAGCCTTGGACGGAATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCC
GGGCACGACGGGGCTCTCACCCTCTCTGGCGCCCCTTTCCAGGGAACTTGGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAACGCCG
AAGACGTCCGATTTTCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAAC
TCAGCGGGTGATCCCGCCTGACCTGGGGTCGCGTTGAGGACTTTGGGTCATCAAGAGCTTTTGGACCGGAACGTCTGACTATATGACGAGAATTAAATTC
ACCACCGCATGTCAAGACGCTCCTGACGTTCTTAGCTCGGATTTTGGCCAACCGCGTGCGGTAACACACGGGAGACCAGCTTCCGT