Detailed information on CNT30544306


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 3e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317005Brassica napusCorylus avellana20.9226.0784.9373forward
CNT30380061Brassica napusManihot esculenta40.1137.1486.43140forward
CNT30630708Brassica napusVigna unguiculata56.7377.0481.82198forward
CNT30503251Brassica napusNicotiana attenuata25.510.2388.7689forward
CNT30711848Brassica napusGlycine max42.1229.788.44147forward
CNT30146071Brassica napusMedicago truncatula20.929.9386.373forward
CNT3061832Brassica napusArabidopsis lyrata44.750.8192.95156forward
CNT3077810Brassica napusBrassica juncea81.0945.4389.4283forward
CNT30264591Brassica napusBrassica rapa45.8524.0687.5160forward
CNT30210701Brassica napusHelianthus annuus28.3711.2983.8499forward
CNT30479805Brassica napusArabidopsis halleri81.9594.0893.01286forward
CNT30321864Brassica napusAsparagus officinalis34.9626.4183.61122forward

Expression of CNT30544306

Peptides detected in this lncRNA

>peptide 1 (48 aa)
IEILIKQSVQSIFEKIIKTRNSLEGWSPLSSSSDDCKQIVAKRITEML*

>peptide 2 (53 aa)
MKKPSIANMANLPFLISLTLRRAPCSGSLASPKGSNGPPGRTTSATTARTRLIG

Sequence

>CNT30544306
ATAGAAATTCTCATCAAACAAAGTGTACAAAGCATTTTTGAAAAGATCATTAAAACTAGAAATAGCTTAGAGGGTTGGAGCCCTCTCAGCAGTTCCAGCG
ATGACTGTAAGCAAATTGTTGCCAAAAGGATCACTGAGATGCTTTGAAAGGTTCTCAACAGGACCTTCTCCTGTAACATAAGCTTGGATGAAGAAACCGA
GCATCGCAAACATGGCTAATCTCCCGTTCTTGATCTCTTTAACCTTGAGAAGAGCACCTTGTTCGGGGTCCTTAGCAAGTCCCAAGGGATCAAATGGACC
TCCTGGGAGAACAACCTCAGCAACTACAGCGAGAACAAGGTTGATTGGG