Detailed information on CNT30544223


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 5e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675951Brassica napusSetaria viridis21.6939.5884.2195forward
CNT30529934Brassica napusEucalyptus grandis31.7433.3382.01139forward
CNT3076639Brassica napusBrassica juncea99.7768.3994.51437forward
CNT30365203Brassica napusSorghum bicolor23.7448.3782.69104forward
CNT30573685Brassica napusVitis vinifera30.1433.8586.36132forward
CNT30705212Brassica napusPrunus avium25.830.7190.27113forward
CNT30151326Brassica napusBrachypodium distachyon2931.2884.25127forward

Expression of CNT30544223

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PLFQTNHNENQTALSTCSEQACKVLQREC*

>peptide 2 (46 aa)
MRRPSAKTMIPDLVSGNTHLSVWGLMVIRFTPGKVSSPCMSISLSK*

>peptide 3 (60 aa)
HSSRQTTTRTKQLSVPVVSRLVRSFNGNADVVRLVLCQLSELSSKLAQVKCRNLLIQMLG*

Sequence

>CNT30544223
CCACTCTTCCAGACAAACCACAACGAGAACCAAACAGCTCTCAGTACCTGTAGTGAGCAGGCTTGTAAGGTCCTTCAACGGGAATGCTGACGTAGTCAGA
TTGGTCCTTTGTCAGCTTAGTGAGCTTAGCTCCAAGCTTGCCCAAGTGAAGTGCCGCAACCTTCTCATCCAAATGCTTGGGTAGAACGTACACCTTCTTC
TCGTACTTACCGCTCGACTTCTCGTTCCAAAGCTCAAGCTGGGCAATCACCTGGTTGGTGAAAGAGCAAGACATCACGAAACTTGGTTCATGAGACGACC
CTCGGCCAAAACAATGATTCCGGACTTGGTGTCTGGGAACACCCACCTGTCGGTCTGGGGCTTGATGGTGATACGCTTCACTCCAGGGAAGGTCTCAAGT
CCTTGCATGTCAATCTCGTTGTCAAAGTGACCAATGTT