Detailed information on CNT30544087


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639077Brassica napusCapsicum annuum65.7660.6894.281014forward
CNT30311563Brassica napusCamelina sativa66.7366.4798.541029forward
CNT30212627Brassica napusHelianthus annuus63.4996.1793.97979forward
CNT30336076Brassica napusCynara cardunculus64.6635.4992.58997forward

Expression of CNT30544087

Peptides detected in this lncRNA

>peptide 1 (31 aa)
AKPLQRERAWQNLRGKKTLLSLTLVRLCEMT*

>peptide 2 (69 aa)
MRPPPDCRPSVGASAPKGTCRWLSPFGGSAVRTALNYNYHRVAGRILCRRLKYATGYCKWQSGLAATIH*

>peptide 3 (58 aa)
MQPACAQVSAKSILTGALKPKIHPFSTLAHQYAWPRSYQGKMLTLRKNVNTWLDDGPA*

>peptide 4 (45 aa)
MCTSLGQKHPDGSIKTQNSSLQYACPSVRLASIIPRKNVNTKEKC*

>peptide 5 (38 aa)
MSRSVHGSVHGKGQHADMCGQHAADMSSVHGSVHGSVHG

Sequence

>CNT30544087
AGCGAAACCACTGCAAAGGGAACGGGCTTGGCAGAATCTGCGGGGAAAGAAGACCCTGTTGAGTTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAG
GTGTAGAATAAGTGGGAGCTCCGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGGCGGGGTAACAACCCCTTCTT
TTAGACCCAAGACTCGCTTCGGCGGGTCGATCCGGGCGGAGGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGT
GTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGC
GTGGCCTATCGATCCTTTAGACCTTCGGAATTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCG
ACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTG
GGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGCCCGCGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATT
GGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCAACGCAT
GCGCCCGCCGCCCGATTGCCGACCCTCAGTAGGAGCTTCGGCTCCCAAAGGCACGTGTCGTTGGCTAAGTCCGTTCGGCGGAAGCGCCGTCCGGACCGCC
TTGAATTATAATTACCACCGAGTGGCGGGTAGAATCCTTTGCAGACGACTTAAATACGCGACGGGGTATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGA
TCCACTGAGATTCAGCCCTTTGTCGCTAAGATTCGACCCTCCCCCTTTCCAATCACATGTTCCTCCCCAAAACGTTAAAAAACGAAAAACCCAAAAAAAA
TTCAAGTATATAAGAAGATCCCGTCGGAGGTTCGAGATTTTTACTTGGTGAAATTCACTCTCAACCTAATGTTTCAGATTGGCCGATGAAATGCAGCCCG
CATGTGCACAAGTCTCGGCCAAAAGCATCCTGACGGGAGCATTAAAACCCAAAATTCATCCCTTCAGTACGCTTGCCCATCAGTACGCTTGGCCTCGATC
ATACCAAGGAAAAATGTTAACACTAAGGAAAAATGTTAACACTTGGTTGGATGATGGACCAGCATAAGTACTACTTGGACTAATCAGACTGACTTGGACA
GTCCAGTCCATCAAAACTCGAGCTTATGTCCAGATCAGTACACGGATCAGTCCACGGGAAGGGCCAGCATGCTGATATGTGTGGTCAGCATGCTGCTGAT
ATGAGTTCAGTACACGGATCAGTACACGGATCAGTACACGGA