Detailed information on CNT30544024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S841|PSBO2_ARATH, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30567883Brassica napusActinidia chinensis24.716.0382.31130forward
CNT30592113Brassica napusMusa acuminata24.7117.8680.77130forward
CNT30342706Brassica napusEragrostis tef20.3413.6384.11107forward
CNT30724033Brassica napusLupinus angustifolius24.911.6781.68131forward

Expression of CNT30544024

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MCIFFIIEEEETSKDVLIVIKYKEKMFRYDNMITQVDHTTPLGSSHP*

>peptide 2 (29 aa)
MSLVFWKSGGAFLLTLSALTVKEVGSKQNF

Sequence

>CNT30544024
TTAAAGTTAAATAGAGGACTATATATGGATACAAAAAAAACTTAAGATTTAGGGCATGTGCATTTTTTTTATAATAGAAGAAGAAGAAACATCAAAAGAT
GTACTCATTGTAATCAAATACAAAGAGAAGATGTTTAGATATGATAACATGATCACTCAAGTTGACCATACCACACCCCTTGGATCTTCACATCCTTAGG
TACCTTGGCACCCAAGTCAGTATCCGACGGCTGAAGACTTTCGAACACTCCGATCACTTCTCCTGTCTCAGGTTTGCTCTTGGTCACTTTCAAAGTGATC
TCTCCCACCGAAGCTGCCGTGTTCTTCACGTTCTCTTTTGAAAGCTCCTCTTCGTCACCTCTGCCTCCAGCTGGCAATGCAACGGCGTTGTCATATCCTG
TGGAACCACCACGGCCCTTAGGGTGAGACGGGTCATGAGCTTGGTGTTCTGGAAATCAGGAGGCGCATTCTTGCTAACACTCTCAGCCTTGACGGTGAAG
GAAGTAGGCTCGAAGCAGAACTTCTT