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Detailed information on CNT30543653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 1e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Brassica napusSetaria viridis5069.8484.64345forward
CNT30517189Brassica napusJuglans regia18.8433.4284.62130forward
CNT30702258Brassica napusQuercus lobata33.0448.5184.21228forward
CNT30376211Brassica napusArabidopsis thaliana48.1245.9292.77332forward
CNT30619260Brassica napusSesamum indicum46.3830.0583.12320forward
CNT3020603Brassica napusCitrullus lanatus49.2821.9680.88340forward
CNT3072357Brassica napusQuercus suber36.8124.7387.8254forward
CNT30380227Brassica napusManihot esculenta59.1397.8485.54408forward
CNT30402445Brassica napusBeta vulgaris19.2829.9593.23133forward
CNT30628366Brassica napusVigna unguiculata26.8112.9583.24185forward
CNT30200315Brassica napusPisum sativum19.8626.5586.13137forward
CNT30505192Brassica napusNicotiana attenuata18.1222.1287.2125forward
CNT30709695Brassica napusGlycine max25.6552.9990.96177forward
CNT30261371Brassica napusBrassica rapa46.9677.5198.15324forward
CNT30612366Brassica napusArabis alpina36.8193.7393.7254forward
CNT30601056Brassica napusFraxinus excelsior22.929.2181.01158forward
CNT30607325Brassica napusGossypium raimondii48.8426.1281.6337forward
CNT30231757Brassica napusAnanas comosus17.144.8785.59118forward
CNT30651401Brassica napusRosa chinensis22.6158.2185.26156forward
CNT30680065Brassica napusTriticum urartu13.7725.0789.4795forward
CNT30720770Brassica napusTriticum spelta24.6428.3384.12170forward
CNT30355186Brassica napusLactuca sativa22.3220.9287.01154forward
CNT3021984Brassica napusPopulus trichocarpa50.4316.2783.91348forward
CNT30329805Brassica napusDioscorea rotundata17.8320.9591.06123forward
CNT30103876Brassica napusOryza rufipogon50.4376.8285.63348forward
CNT30578287Brassica napusOryza barthii17.5422.9685.95121forward
CNT30117878Brassica napusOryza nivara50.4377.3385.34348forward
CNT30723196Brassica napusLupinus angustifolius49.1342.5382.89339forward

Expression of CNT30543653

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRRPSAKTMIPDLVSGKTHLSVSSPSMSISLSK*

>peptide 2 (48 aa)
LSVPVVSRLVWSFNGNADVVRLVLCQLGELSSKLSQVKCCNLLVQMLG*

>peptide 3 (41 aa)
MLQTIALFFIFLMWSTIMMSLLPVVVTKMSASETTSSRVKT*

>peptide 4 (50 aa)
MGSISVTITLAPAVFMAAAQPFPTSPYPQTTTTFPAIMTSVALMRPSGRE*

Sequence

>CNT30543653
TCTCTCAGTACCTGTAGTGAGCAGGCTTGTATGGTCCTTCAATGGGAATGCTGACGTAGTCAGATTGGTCCTTTGTCAACTTGGTGAGCTTAGCTCCAAG
CTTTCCCAAGTGAAGTGCTGCAACCTTCTCGTCCAAATGCTTGGGTAGAACGTACACCTTCTTCTCGTACTTGCCGCTCGACTTCTCGTTCCAAAGCTCA
AGCTGAGCAATCACCTGGTTGGTGAAAGAGCAAGACATGACGAAACTCGGGTGACCAGTGGCACAACCCAAGTTCATGAGACGACCCTCAGCCAAAACAA
TGATTCCGGACTTGGTGTCTGGGAAGACCCACCTGTCGGTCTCGAGCCCGAGCATGTCAATCTCGTTGTCAAAGTGACCAATGTTGCAAACAATAGCATT
GTTCTTCATCTTCCTCATGTGGTCAACCATTATGATGTCTTTGTTACCGGTGGTGGTGACAAAGATGTCAGCTTCGGAAACAACATCCTCAAGGGTCAAA
ACTTGAAGTCCTTCCATCATAGCCTGTAGGGCACAGATGGGATCTATCTCCGTCACAATAACTCTAGCACCAGCGGTCTTCATGGCAGCGGCACAACCCT
TTCCAACATCACCATATCCGCAGACAACGACAACCTTTCCGGCGATCATGACATCAGTGGCCCTCATGAGACCATCAGGGAGAGAATGAC