Detailed information on CNT30543621


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 1e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640134Brassica napusNymphaea colorata57.0321.2284.93146forward
CNT30512774Brassica napusJuglans regia60.5512.4287.74155forward
CNT30373037Brassica napusArabidopsis thaliana39.454.9691.09101forward
CNT3019595Brassica napusCitrullus lanatus28.5213.1584.9373forward
CNT3071371Brassica napusQuercus suber59.3852.9688.16152forward
CNT30405832Brassica napusBeta vulgaris60.5519.3386.45155forward
CNT30636551Brassica napusCapsicum annuum54.321.0688.49139forward
CNT30192963Brassica napusSecale cereale60.1628.8486.36154forward
CNT30224330Brassica napusHordeum vulgare34.7718.4383.1589forward
CNT30510528Brassica napusSolanum lycopersicum60.1611.9687.01154forward
CNT30312884Brassica napusCamelina sativa58.9814.9491.39151forward
CNT30263667Brassica napusBrassica rapa58.9821.3698.68151forward
CNT30612508Brassica napusArabis alpina58.985.9589.4151forward
CNT30445994Brassica napusSaccharum spontaneum57.0310.2586.99146forward
CNT301916Brassica napusZea mays57.0335.8786.3146forward
CNT30212259Brassica napusHelianthus annuus53.5220.5484.67137forward
CNT30716232Brassica napusMalus domestica golden60.5511.6989.03155forward
CNT30722731Brassica napusTriticum spelta40.6220.3588.46104forward
CNT30361348Brassica napusSorghum bicolor57.0327.7686.3146forward
CNT30706279Brassica napusPrunus avium60.5525.5485.81155forward
CNT30557952Brassica napusPanicum hallii58.9818.5388.74151forward

Expression of CNT30543621

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEAYILAKLVRVKAHPWRPAEKATVPFSG*

>peptide 2 (44 aa)
TIRITVSDGSGILIIERTFVQILNTVPLCSVGRWKHTSWQSWSG*

Sequence

>CNT30543621
GGACCATTAGGATCACAGTTTCTGATGGCAGTGGCATACTGATCATCGAGAGGACCTTCGTACAAATTCTCAACACGGTACCTCTGTGCAGTGTGGGGAG
ATGGAAGCATACATCTTGGCAAAGTTGGTCAGGGTGAAAGCCCATCCGTGGAGACCAGCAGAGAAGGCAACAGTTCCCTTCTCAGGGTAAACCTGAACAT
CACCAAGGAGAGGATCCTCATACGTAGCCATGATGACATTGGCATTCTCAATAACC