Detailed information on CNT30543607


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF87|CB24_ARATH, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30631092Brassica napusVigna unguiculata58.327.3280.26309forward
CNT30238815Brassica napusBrassica oleracea80.9464.1393.71429forward
CNT3077068Brassica napusBrassica juncea81.5142.5693.06432forward
CNT30264606Brassica napusBrassica rapa80.9450.0693.24429forward
CNT30612591Brassica napusArabis alpina8053.1393.16424forward
CNT30480205Brassica napusArabidopsis halleri80.1956.2992425forward
CNT30114814Brassica napusEutrema salsugineum79.6251.2193.36422forward

Expression of CNT30543607

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKNPNMENIASRPFLSSFTFNSENASGSSAKFNGSNAPPG*

>peptide 2 (33 aa)
DGLDKESKHGEHSKPTVFKLLHFQFRKRLRILR*

Sequence

>CNT30543607
CGATGGCTTGGACAAAGAATCCAAACATGGAGAACATAGCAAGCCGACCGTTTTTAAGCTCCTTCACTTTCAATTCCGAAAACGCCTCCGGATCCTCCGC
TAAGTTCAACGGGTCAAACGCCCCACCCGGGTAAAGCGGGTCAAGCCCTTCACCAAGAGGTCCACCTCCGATTCTGTACCCTTCGATTAAACCCATCAGC
ACAACTTGAGAAGCCCAGATTGCTAATATGCTTTGCGCGTGGATCAAGTTAGGGTTGCCGAGGTAATCAAGCCCTCCTTCTGAGAAGATCTGAGACCCTG
CCTTGAACCACACGGCTTCACCGAATTTGACTCCGTTTTTGGAGAGAATCTCTGGGAAGGTGCATCCTAAAGCGCCGAGCATTGCCCATCTGCTGTGGAT
TACTTCCAGCTCACGGTTCTTTGCGAAGGCTTCAAAGCCGTTTGTCCGGCGAAAGAGGAGTGCTGGATTGCTGATGTGGCCATTCTTGTTTATCTCAACT
CCAAACAAAGATACAAATGAAGAGAGAAAT