CANTATAdb - search

Detailed information on CNT30543367

BLAST search results

BLAST vs Swiss-Prot:
sp|P49249|IN22_MAIZE, E-value = 1e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3060034	Brassica napus	Arabidopsis lyrata	46.03	94.48	86.84	342	forward
CNT3076889	Brassica napus	Brassica juncea	45.36	77.65	90.21	337	forward
CNT30479817	Brassica napus	Arabidopsis halleri	35.67	72.01	90.94	265	forward
CNT30570762	Brassica napus	Vitis vinifera	17.63	31.57	80.92	131	forward

Expression of CNT30543367

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYLPSCSHCSLCSQEALVQQRRSLFLEDCKQQ

>peptide 2 (77 aa)
MSTQLVYAGFQEDNGGVSEFLKVANMLPYLSPFTDSAWTMVSSSSISSGVSFTDRAPMFRLRFSILVVPGMGQTSSP*

>peptide 3 (48 aa)
MRGLVVQECILSSRTLHKLSHRESCCGLSFPVGILVESAIRVDKRLVD*

Sequence

>CNT30543367
TTTGAATAGAAGAGACGTTTATTTATAGAGTTTGGACACAGTGTATGGAGTTGTAGATTGAAGTTTCACTTGGGGAACTCTATAGATAGTTTATTATACA
ATACATTCACACTGATATTTGGGTTTGATAACCTACTCTCAAGACACAACAGATCAATTACTTTCATCATACTGACACAGAAGTTAAGACTGCTTCAATG
TCAACTCAGCTGGTTTATGCAGGTTTCCAGGAAGACAATGGTGGAGTGTCAGAGTTCTTGAAAGTGGCCAACATGTTACCATATCTTTCTCCTTTCACAG
ACTCTGCTTGGACAATGGTCTCGAGCTCAAGCATCTCATCAGGAGTGAGTTTCACAGATAGAGCTCCAATGTTCAGATTGAGGTTTTCGATCTTAGTAGT
TCCCGGGATGGGGCAAACATCGTCTCCCTGATGGTGAAGCCATGCGAGGGCTAGTTGTGCAGGAGTGCATCCTTTCTTCTCGGACATTGCATAAACTTTC
TCATAGAGAATCTTGTTGTGGCCTAAGTTTTCCGGTTGGAATCTTGGTAGAGTCTGCGATTAGAGTAGATAAACGGTTGGTTGATTGATTTACCTACAAT
TTTTTATCAAGAGTTCATCACACAAACAAGGCATACAGAGCAGCCTATGTACTTGCCTTCCTGTAGTCATTGTTCTCTATGTTCTCAAGAAGCTTTGGTC
CAGCAGCGAAGAAGCCTCTTCCTAGAGGACTGTAAGCAACAAT