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Detailed information on CNT30543279


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30490123Brassica napusOlea europaea50.0930.5698.5532forward
CNT30712732Brassica napusGlycine max52.1740.0993.14554forward
CNT30157615Brassica napusPistacia vera52.8276.4394.65561forward
CNT30592527Brassica napusMusa acuminata17.856.5998.41189forward
CNT3082633Brassica napusBrassica juncea29.6695.7498.41315forward
CNT30605266Brassica napusGossypium raimondii45.6723.1798.35485forward
CNT30364089Brassica napusSorghum bicolor19.2144.9391.67204forward
CNT30595572Brassica napusOryza meridionalis25.3331.3995.54269forward
CNT30577866Brassica napusOryza barthii23.4515.2996.39249reverse complement
CNT30335924Brassica napusCynara cardunculus16.8522.1391.62179forward

Expression of CNT30543279

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 2 (29 aa)
MMEKPASPSSFSRVTSYLFFQIPKGRCEL*

>peptide 3 (41 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQAVLVCTDRLLGC*

Sequence

>CNT30543279
GAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCG
GGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTGAAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCG
AGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTTGGGATTTGAAGAAAAAGAAAGACGAAGCTTCGTTCCAAAGTGTTCACTTCTTTTTCGCCAGGTTT
CATTCGATTTCTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTCTTCTTTCAGTCGAGTTACTTCGTACCTCTTCTTTCAGATTCCTAAAGGGCGC
TGTGAACTGTAATTGTGAAAAGAACCCTATGACGGGAGTGCAATAGAGAACCTGAGATCCGATGCAAACAATCAGTCGAAGGAGTAGTCAAGCGCACTCA
CTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAAGAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAAAGGTGGAATCTTCTAGT
TCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATAC
GGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCG
AGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCGTTCTCGTTTGTACAGACAGACTTTTG
GGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAA
CCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGC