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Detailed information on CNT30543278


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670969Brassica napusSetaria viridis29.1969.0696.57788reverse complement
CNT30641383Brassica napusNymphaea colorata29.1925.2294.16788forward
CNT30702366Brassica napusQuercus lobata29.1979.1297.21788reverse complement
CNT30221833Brassica napusHordeum vulgare29.1957.7394.67788forward
CNT30569655Brassica napusActinidia chinensis29.1922.1397.08788forward
CNT30234026Brassica napusBrassica oleracea14.5698.9998.73393reverse complement
CNT30508923Brassica napusSolanum lycopersicum11.1590.1299.67301forward
CNT30554477Brassica napusOryza glaberrima14.3353.5397.42387reverse complement
CNT30147396Brassica napusMedicago truncatula29.1926.4997.34788forward
CNT30441199Brassica napusAegilops tauschii29.1979.3696.32788forward
CNT30242786Brassica napusAvena sativa21.3366.5194.44576forward
CNT30682011Brassica napusTriticum urartu29.1980.8296.19788forward
CNT30429739Brassica napusPapaver somniferum29.1924.4994.67788forward
CNT3056076Brassica napusAmborella trichopoda26.8931.5491.87726forward
CNT3038324Brassica napusCucumis melo28.8941.3696.41780reverse complement
CNT30725732Brassica napusLupinus angustifolius10.4462.5397.52282forward

Expression of CNT30543278

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMEKPASPSSFSRVTSYLFFQIPKGRCEL*

>peptide 2 (41 aa)
MCRIGGRSSHRKTNPERPLFRLRVPNRRTENSGGGGTLRGG*

>peptide 3 (41 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQAVLVCTDRLLGC*

>peptide 4 (45 aa)
MSNEKSCEKQDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTRK*

>peptide 5 (45 aa)
RVSSRFLWCSVYPEYKIEKNALDGCPGIEKEGRFQRRKAMGRYRL*

>peptide 6 (60 aa)
EFHRDFCGVQCTLSTRSKRMHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

Sequence

>CNT30543278
CAGAGTTTCATCGAGATTTTTGTGGTGTTCAGTGTACCCTGAGTACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGC
TTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGA
CTTTGAAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTTGGGATTTG
AAGAAAAAGAAAGACGAAGCTTCGTTCCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTCTTGTGGATTGGATGATGGAAAAACCAGCAAGC
CCCTCTTCTTTCAGTCGAGTTACTTCGTACCTCTTCTTTCAGATTCCTAAAGGGCGCTGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGA
AGGTGATAGCCCTGTAGATTCGTTCCTATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCAC
CCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATGACGGGAGTGCAATAGAGAACCTGAGA
TCCGATGCAAACAATCAGTCGAAGGAGTAGTCAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAAGAGCGGCTTA
AGCCATTAGGTGTAGGCGCTTTCCAAAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTC
TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTT
CCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAA
ACTCCGAATACAGGCCGTTCTCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATA
GCTCACTGGTCTAGCTCCATGGCACCGAAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGCAAAGCTGCTTTTCAAGTGTCAGTAGC
GGAACGTTCTGTCAATCGGAGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACAA
GATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAAACCCCGAAAGGGCTGCCGTCCGATGGGTACAC
GAAAGTGACGAAGTTGCTTTGACTACAAAACCATCCCTCTCTCTTGGAGCGAATTGGATGATCGGGACGACTCTCCTTTTAGTCGAGCGGAGGAACCCCT
CACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCACGGTCGACCTACGCTACTGGCGCTTCAAAAGGCCAAAGTC
TCGTCGTAGTTTGGCGAACTTCAGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGACCTGCCATAGTCACGAGTC
TGTTTATAGTCGCGACTCTTGTCATAGTCAAGAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCC
CAAACCGACACAGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTCACTATAGCTTCGCAGTGACAA
CCTTGATCGAATGTGTAGGATAGGTGGGAGGTCCTCACATAGAAAGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGGTGCCTAACCGCCGCACCGAG
AATTCGGGGGGAGGCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCAAAGA
TTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGG
AAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGAC
TCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTT
CCTATCTACCGTTGGTGTTAAAGCGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGACAA
TAGCAGCGCCGGGAAGCTAAGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAGTTCTCGGAACAGGTTTTAGAACAGAACTTCG