Detailed information on CNT30543277


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200883Brassica napusPisum sativum36.1115.2390.05221forward
CNT30194088Brassica napusSecale cereale43.1426.9190.53264forward
CNT30397046Brassica napusTriticum turgidum12.9124.3187.3479reverse complement
CNT30212621Brassica napusHelianthus annuus43.7915.3591.79268forward
CNT30127030Brassica napusCorymbia citriodora34.6499.0791.51212forward
CNT30684056Brassica napusTriticum urartu43.1411.0590.53264forward
CNT30571978Brassica napusVitis vinifera43.465.7792.11266forward

Expression of CNT30543277

Peptides detected in this lncRNA

>peptide 1 (52 aa)
SFFYSGITTKDNNPDILILKIQGHSFHTVGKKNHFPSLNLVQSINLCNPISN*

>peptide 2 (38 aa)
SPSFIAVSPPKTTIPTFSFSRFKAIPFTPLAKRTISPA*

Sequence

>CNT30543277
TCTCCTTCTTTTATAGCGGTATCACCACCAAAGACAACAATCCCGACATTCTCATTCTCAAGATTCAAGGCCATTCCTTTCACACCGTTGGCAAAAAGAA
CCATTTCCCCAGCTTGAATCTCGTTCAATCCATAAACTTGTGCAATCCCATCTCCAACTGAGACCACTCGACCGATCTCATCCACTTGAAAATTCGCGTA
AAAGTTCCTAATTCGACTTTCGAATAGATTCGTTAGTTCCGCAGCTCTGGGAGATAATTCCATAATTCCATTTTTGAATTCAGAGGCAAGGAGGAATACC
GCTTTAGAAAAAAAAATCAACCTTATGAACTGAACGAAAGCACTAACTCCAGAGCTTGGGCAAAGTAGCGACTATTCGTGCCCTGATAGATCAGGTCTAA
ATAGATCGCGTTCGCTCCTAAGAGATTCTCTGCAGGAGTATCAACAATAATAAAAAAAAAGATTTAAAACTTTAGGTATATTTATACCCGTTAGAGACGG
AATGTCATCATAAGGGTGTTGTTCCTTATATTTAGTAAAAAGAGATGAGAGTAGGAATTCCACTTCTTGCTTTTTCATTTTAAACAGCAAGGTAGTTGTA
GGAATCTCTTTT