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Detailed information on CNT30543276


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30484250Brassica napusChara braunii15.5825.6295.16186reverse complement
CNT3099667Brassica napusOryza rufipogon21.5211.2192.61257forward

Expression of CNT30543276

Peptides detected in this lncRNA

>peptide 1 (60 aa)
FLVTRPGDIRSENADMSNEKSCEKQDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTRK*

>peptide 2 (47 aa)
MCRIGGRSQGFGCSPIQVVRELGLERRETVRFLSTVGVKARTARSQP*

Sequence

>CNT30543276
GGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACAAGATCGCCTGCCAGTGGAAGGCTT
TCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAAACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGAC
TACAAAACCATCCCTCTCTCTTGGAGCGAATTGGATGATCGGGACGACTCTCCTTTTAGTCGAGCGGAGGAACCCCTCACTCTCCTTTCCCTAATATGAA
CCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCACGGTCGACCTACGCTACTGGCGCTTCAAAAGGCCAAAGTCTCGTCGTAGTTTGGCGAACTTCA
GTAGGGGCCTTTAGTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGACCTGCCATAGTCACGAGTCTGTTTATAGTCGCGACTCTTGTC
ATAGTCAAGAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGT
AGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGA
AAGCGGCACATACCAGGGGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCAG
TGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTCACTATAGCTTCGCAGTGACAACCTTGATCGAATG
TGTAGGATAGGTGGGAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTA
CCGTTGGTGTTAAAGCGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGACAATAGCAGCG
CCGGGAAGCTAAGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAGTTCTCGGAACAGGTTTTAGAACAGAACTTCGAT