CANTATAdb - search

Detailed information on CNT30543270

BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 6e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3092080	Brassica napus	Solanum tuberosum	11.52	47.34	97.46	276	forward
CNT30688988	Brassica napus	Triticum urartu	20.17	24.85	94	483	forward
CNT30320583	Brassica napus	Asparagus officinalis	11.15	24.34	98.88	267	forward
CNT30331546	Brassica napus	Dioscorea rotundata	17.41	100	90.89	417	reverse complement

Expression of CNT30543270

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MISMAPKMYQGSSDSPKRRDLAKLLFKCQ*

>peptide 2 (39 aa)
MSTHHILGLKKVPRVRLFADSIRFLSTVGVKARTARSQP*

>peptide 3 (29 aa)
MMEKPASPSSFSRVTSYLFFQIPKGRCEL*

>peptide 4 (39 aa)
WMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 5 (45 aa)
MSNEKSCEKQDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTRK*

Sequence

>CNT30543270
TGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCG
TATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTGAAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCG
TTAGTAGCGGCGAGCGAGAGCGGATTTGGGATTTGAAGAAAAAGAAAGACGAAGCTTCGTTCCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGAT
TTCTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTCTTCTTTCAGTCGAGTTACTTCGTACCTCTTCTTTCAGATTCCTAAAGGGCGCTGTGAACT
GTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCTATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGA
ATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAG
AACCCTATGACGGGAGTGCAATAGAGAACCTGAGATCCGATGCAAACAATCAGTCGAAGGAGTAGTCAAGCGCACTCACTCTAACGGCGTACCTTTTGCA
TGATGGGTCAGCGAGGAAATGGGAAGAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAAAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACC
GATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGG
TGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATCTCCATGGCACCGAAAATGTATCAGGGCTCAAGT
GATTCACCGAAGCGACGAGACCTTGCAAAGCTGCTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGAGAAGGTTTTTGGTGACAAGACCTGGAGA
TATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACAAGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGA
GTGAATCGGTCCCTAAGGAAACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAAAACCATCCCTCTCTCTTGGA
GCGAATTGGATGATCGGGACGACTCTCCTTTTAGTCGAGCGGAGGAACCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGA
CTCGGCCTGGCACGGTCGACCTACGCTACTGGCGCTTCAAAAGGCCAAAGTCTCGTCGTAGTTTGGCGAACTTCAGTAGGGGCCTTTAGTCTTTTGATTA
GAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGACCTGCCATAGTCACGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTCAAGAAGTGTTATAAGCTTT
GAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGAC
TGCCCCGCTGTCTCCGACATGGACCCAGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTCACTATA
GCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGCGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAA
CGGAGGTGTGCGAAGGTAGGCTCAAGCAAAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAA
GTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTA
TCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAATTCGGTTCCTAT
CTACCGTTGGTGTTAAAGCGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGACAATAGCA
GCGCCGGGAAGCTAAGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAGTTCTCGGAACAGGTTTTAGAACAGAACTTCG