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Detailed information on CNT30543268


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 7e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Brassica napusOryza sativa21100.2196.06482forward
CNT30671914Brassica napusSetaria viridis31.8543.9696.31731forward
CNT30524649Brassica napusSetaria italica51.8136.0795.291189forward
CNT30550219Brassica napusIpomoea triloba40.3121.398.16925forward
CNT30618986Brassica napusSesamum indicum40.4829.6395.48929forward
CNT30730481Brassica napusCorchorus capsularis44.7183.4196.591026reverse complement
CNT30632407Brassica napusVigna unguiculata53.945.895.231237reverse complement
CNT30505430Brassica napusNicotiana attenuata40.3139.4198.05925forward
CNT30712870Brassica napusGlycine max32.2444.5294.73740forward
CNT30157603Brassica napusPistacia vera32.5578.394.11747forward
CNT30185187Brassica napusSecale cereale51.7633.5995.21188forward
CNT30300122Brassica napusTriticum aestivum51.7655.0895.121188forward
CNT30221907Brassica napusHordeum vulgare51.297.8494.381175forward
CNT30385334Brassica napusTriticum turgidum51.7639.6395.21188forward
CNT30511493Brassica napusSolanum lycopersicum13.1633.7898.01302reverse complement
CNT30147391Brassica napusMedicago truncatula40.4836.7296.99929reverse complement
CNT30435868Brassica napusAegilops tauschii48.579.8495.61113forward
CNT30670388Brassica napusTriticum dicoccoides51.7642.3794.951188forward
CNT30140120Brassica napusLolium perenne51.7635.7795.371188forward
CNT3017954Brassica napusZea mays51.9831.4995.051193forward
CNT30216578Brassica napusKalanchoe fedtschenkoi40.7428.0796.79935forward
CNT30655407Brassica napusRosa chinensis52.9436.3495.971215forward
CNT30207637Brassica napusHelianthus annuus40.5247.5596.56930forward
CNT30628241Brassica napusDaucus carota40.5234.4497.85930reverse complement
CNT30689137Brassica napusTriticum urartu45.186.0395.071035forward
CNT30721631Brassica napusTriticum spelta51.7634.2195.121188forward
CNT30360996Brassica napusLactuca sativa40.5263.7497.74930forward
CNT30434643Brassica napusPapaver somniferum32.98101.7593.66757forward
CNT30571858Brassica napusVitis vinifera40.5726.8697.53931reverse complement
CNT3057903Brassica napusAmborella trichopoda50.6348.591.911162reverse complement
CNT30108930Brassica napusOryza longistaminata49.3748.4295.941133forward
CNT3038420Brassica napusCucumis melo29.4647.3497.04676forward
CNT30499372Brassica napusDigitaria exilis51.7634.9595.451188forward
CNT30603680Brassica napusOryza punctata51.7630.195.451188forward

Expression of CNT30543268

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MMEKPASPSSFSRVTSYLFFQIPKGRCEL*

>peptide 2 (60 aa)
EFHRDFCGVQCTLSTRSKRMHWMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 3 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLAKLLFKCQ*

>peptide 4 (45 aa)
RVSSRFLWCSVYPEYKIEKNALDGCPGIEKEGRFQRRKAMGRYRL*

>peptide 5 (45 aa)
MSNEKSCEKQDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTRK*

>peptide 6 (41 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQAVLVCTDRLLGC*

Sequence

>CNT30543268
CAGAGTTTCATCGAGATTTTTGTGGTGTTCAGTGTACCCTGAGTACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGC
TTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGA
CTTTGAAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTTGGGATTTG
AAGAAAAAGAAAGACGAAGCTTCGTTCCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATTTCTTGTGGATTGGATGATGGAAAAACCAGCAAGC
CCCTCTTCTTTCAGTCGAGTTACTTCGTACCTCTTCTTTCAGATTCCTAAAGGGCGCTGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGA
AGGTGATAGCCCTGTAGATTCGTTCCTATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCAC
CCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATGACGGGAGTGCAATAGAGAACCTGAGA
TCCGATGCAAACAATCAGTCGAAGGAGTAGTCAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAAGAGCGGCTTA
AGCCATTAGGTGTAGGCGCTTTCCAAAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTC
TAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTT
CCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAA
ACTCCGAATACAGGCCGTTCTCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCT
AAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGT
CTAGCTCCATGGCACCGAAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGCAAAGCTGCTTTTCAAGTGTCAGTAGCGGAACGTTCT
GTCAATCGGAGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACAAGATCGCCTGC
CAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAAACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACG
AAGTTGCTTTGACTACAAAACCATCCCTCTCTCTTGGAGCGAATTGGATGATCGGGACGACTCTCCTTTTAGTCGAGCGGAGGAACCCCTCACTCTCCTT
TCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCACGGTCGACCTACGCTACTGGCGCTTCAAAAGGCCAAAGTCTCGTCGTAGT
TTGGCGAACTTCAGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGACCTGCCATAGTCACGAGTCTGTTTATAGT
CGCGACTCTTGTCATAGTCAAGAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACA
CAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGTTCGGTTCCTAT
CTACCGTTGGTGTTAAAGCGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGACAATAGCA
GCGCCGGGAAGCTAAGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAGTTCTCGGAACAGGTTTTAGAACAGAACTTCG