« Back to Brassica napus search


Detailed information on CNT30543267


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712072Brassica napusGlycine max19.4741.9692.11266forward
CNT30637481Brassica napusCapsicum annuum21.0164.0693.73287forward
CNT3089926Brassica napusSolanum tuberosum25.5515.7897.42349reverse complement
CNT30202530Brassica napusHelianthus annuus41.6577.6397.01569forward
CNT30369921Brassica napusOryza glumipatula16.4797.8394.22225forward
CNT30331625Brassica napusDioscorea rotundata23.57101.2695.96322forward

Expression of CNT30543267

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 2 (46 aa)
MEAPVNGGSNSNCPKVGSSKDSARERNGISLPDCETDWSNRDESRP*

>peptide 3 (29 aa)
MMEKPASPSSFSRVTSYLFFQIPKGRCEL*

Sequence

>CNT30543267
GGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGT
ATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTGAAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGT
TAGTAGCGGCGAGCGAGAGCGGATTTGGGATTTGAAGAAAAAGAAAGACGAAGCTTCGTTCCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGATT
TCTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTCTTCTTTCAGTCGAGTTACTTCGTACCTCTTCTTTCAGATTCCTAAAGGGCGCTGTGAACTG
TAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACC
CCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGG
TGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGA
GTCTGACACCTGCCCGGTGCTGGAAAGTCAAAAGGAGAAGTGTTATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAG
GTAGGCTCAAGCAAAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGAT
CCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTT
GGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGT
CGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGCGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGT
ACCGGTTGTTATGACAATAGCAGCGCCGGGAAGCTAAGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAGTTCTCGGAACAGGT
TTTAGAACAGAACTTCGATAGGCGAGAGGTGGAAGCACCGCGAGGTGTGGAGCCATCTCGTACTAA