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Detailed information on CNT30543266


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 7e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378673Brassica napusArabidopsis thaliana24.9454.2999.56677reverse complement
CNT30283003Brassica napusChenopodium quinoa22.7764.7197.09618reverse complement
CNT30219690Brassica napusHordeum vulgare23.894.3195.05646reverse complement
CNT30396495Brassica napusTriticum turgidum25.1742.496.49683forward
CNT30605073Brassica napusGossypium raimondii24.9444.5498.38677reverse complement
CNT30346087Brassica napusEragrostis tef25.1766.0596.63683forward
CNT30359771Brassica napusLactuca sativa24.9464.7898.67677forward
CNT30557400Brassica napusPanicum hallii21.342.1396.89578forward
CNT3039925Brassica napusMarchantia polymorpha12.0565.9396.02327forward

Expression of CNT30543266

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MISMAPKMYQGSSDSPKRRDLAKLLFKCQ*

>peptide 2 (29 aa)
MMEKPASPSSFSRVTSYLFFQIPKGRCEL*

>peptide 3 (39 aa)
WMDARALRRKDAFRGERPWGDTVCDPWISDRETVSKLRG*

>peptide 4 (45 aa)
MSNEKSCEKQDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTRK*

Sequence

>CNT30543266
TGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCG
TATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTGAAAACTTAGCGAACTGAAACATCTAAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCG
TTAGTAGCGGCGAGCGAGAGCGGATTTGGGATTTGAAGAAAAAGAAAGACGAAGCTTCGTTCCAAAGTGTTCACTTCTTTTTCGCCAGGTTTCATTCGAT
TTCTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTCTTCTTTCAGTCGAGTTACTTCGTACCTCTTCTTTCAGATTCCTAAAGGGCGCTGTGAACT
GTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCTATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGA
ATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAG
AACCCTATGACGGGAGTGCAATAGAGAACCTGAGATCCGATGCAAACAATCAGTCGAAGGAGTAGTCAAGCGCACTCACTCTAACGGCGTACCTTTTGCA
TGATGGGTCAGCGAGGAAATGGGAAGAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAAAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACC
GATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGG
TGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATCTCCATGGCACCGAAAATGTATCAGGGCTCAAGT
GATTCACCGAAGCGACGAGACCTTGCAAAGCTGCTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGAGAAGGTTTTTGGTGACAAGACCTGGAGA
TATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACAAGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGA
GTGAATCGGTCCCTAAGGAAACCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAAAACCATCCCTCTCTCTTGGA
GCGAATTGGATGATCGGGACGACTCTCCTTTTAGTCGAGCGGAGGAACCCCTCACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGA
CTCGGCCTGGCACGGTCGACCTACGCTACTGGCGCTTCAAAAGGCCAAAGTCTCGTCGTAGTTTGGCGAACTTCAGTAGGGGCCTTTAGTCTTTTGATTA
GAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGACCTGCCATAGTCACGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTCAAGAAGGTTGAAACTTCCA
GGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGA
ACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCG
ACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAAAAGGAGAAGTGTTATAAG
CTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAA
CGACTGCCCCGCTGTCTCCGACATGGACCCAGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTCAC
TATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTA
GGCTCAAGCAAAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCG
GGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGC
ACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGGTTTAGAACGTCGT
GAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGCGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACC
GGTTGTTATGACAATAGCAGCGCCGGGAAGCTAAGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAGTTCTCGGAACAGGTTTT
AGAACAGAACTTCG