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Detailed information on CNT3054326


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30491922Amborella trichopodaOlea europaea10.0550.6988.44147reverse complement
CNT30414626Amborella trichopodaPapaver somniferum11.2137.2789.63164reverse complement
CNT30110673Amborella trichopodaOryza longistaminata7.5240.5988.18110reverse complement
CNT3022114Amborella trichopodaPopulus trichocarpa9.8422.8685.42144reverse complement

Expression of CNT3054326

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKVGADHTQPCCITWGYLPSLGRYELYPMKSIFTIHHPK*

>peptide 2 (35 aa)
MTQYVRHVALYAYPSCVFLSRTPKRYFWNTNGHEG*

>peptide 3 (38 aa)
MRYLLCEVSAIKCQSSHLSAMYNLKIVELKDLREIRIL*

>peptide 4 (41 aa)
MGLPWYHVHTVVLNDPRWLLSIHIMHTTLVSGWAVQWLSMN*

>peptide 5 (59 aa)
MITKGTEFTLVRDNPLKSENGQVHSIVFSNAIKLTWVSILMKRYFHGFALVSCSYRCLE*

>peptide 6 (63 aa)
MSDMSHYMPTQAASSSPGLQKGTFGTPMGMKDKGVKYYNFTLIRKRKSGFIVFMILSFIVFYS*

Sequence

>CNT3054326
CTAAAGAAGCTATCATGTGAAAGCGGTTAGCAATGTAACATGAGGTATTTACTGTGCGAGGTTAGTGCCATCAAATGCCAAAGTTCTCATCTTTCAGCGA
TGTATAACCTTAAAATAGTGGAGCTCAAGGATCTGAGAGAGATAAGGATCTTATAGGGATATTGCATGAGATGGAATTGATTAGGTTCTTGGTGTCAAGT
GCCAAAGTTCTCAATACATTTCATTTTCATTAAAGACTCACAACTGTGGCTAGAGCTGGTGTTGCTCCTTCCTCTGAACCTCAACATAGTCATTAATCCT
CACCCTTAGTTTCCATACAAAGCGTTTTGAGGCTGCTATCTGTTCAGGCCTTTCCAGGCCAATTAGAGTGTTTTGAAGCCAAAGGTTGCACTTAAATCTG
AACAGAATTTCAGAAGTTCTGATGCAGCTGATATGAAGGTGGGTGCAGACCATACACAGCCGTGCTGTATAACATGGGGATATCTACCCTCACTTGGTAG
ATATGAGTTGTACCCTATGAAGTCAATCTTCACCATACACCATCCGAAATGATGGTGGGTGTCCATATGGTACATATATTACTATTACCAACACCAATTT
GATATTTTTTGGACGGAGCCTGGATAGGCTACTCTATTTTATTGGTCAAAGCCAACCATAGATTATTCTAATTGATAATATCTATACCCAAAACAAAAGG
ATTAATTGCACTTCAAGCTCCGAATTATTGGTGGTTCAATCAATCTTTTTTGGACGAAAGAGAAGGATATCTCGATCGGGAGAGAGAACGGGGGAATTCC
ATATGACCCAATATGTCAGACATGTCGCACTATATGCCTACCCAAGCTGCGTCTTCCTCTCCAGGACTCCAAAAAGGTACTTTTGGAACACCAATGGGCA
TGAAGGATAAAGGAGTTAAGTACTATAATTTCACTTTGATTCGGAAACGTAAGAGTGGGTTTATTGTCTTCATGATATTGTCGTTTATTGTATTTTATTC
ATAAATTAGAAGGTTCGTAGAGGAATTTGGAATGAAGAGGATTCTTAATGGATCTTAAAGATGAATCGTTCGAATGATGAACAAATATACATGCATTTGC
TTCCAATGGGACCAATCTCGTATTGATACTTATCAAGTATAGAATAGATTTGGTTCTCTTTGTTCCTATGAGCAGAGTCGTTTGATGATTACCAAGGGCA
CGGAGTTCACTCTTGTCCGAGATAATCCATTGAAAAGTGAAAATGGTCAGGTCCATAGCATAGTTTTTTCCAATGCGATAAAGTTAACATGGGTGTCTAT
TTTGATGAAGAGGTATTTCCATGGGTTTGCCTTGGTATCATGTTCATACCGTTGTCTTGAATGATCCCCGTTGGTTGCTTTCTATCCATATAATGCATAC
AACTCTAGTTTCTGGTTGGGCAGTTCAATGGCTCTCTATGAATTAGTTGTTTTTGATCCCTCT