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Detailed information on CNT305432


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674723Zea maysSetaria viridis51.521.4591.01189forward
CNT30522155Zea maysSetaria italica44.6918.6690.24164forward
CNT30534291Zea maysEucalyptus grandis47.4127.3290.23174forward
CNT30728062Zea maysCorchorus capsularis48.7720.5590.5179forward
CNT30381383Zea maysManihot esculenta47.149.8587.28173forward
CNT30196370Zea maysPisum sativum41.6916.0591.5153forward
CNT30486254Zea maysOlea europaea50.1448.0487.5184forward
CNT30710178Zea maysGlycine max38.9633.7387.41143forward
CNT30291318Zea maysTriticum aestivum44.4148.9589.57163forward
CNT30223001Zea maysHordeum vulgare37.875090.65139forward
CNT30390564Zea maysTriticum turgidum48.2358.2292.66177forward
CNT30562824Zea maysActinidia chinensis48.2331.8389.83177forward
CNT30511260Zea maysSolanum lycopersicum46.5942.4390.64171forward
CNT30553024Zea maysOryza glaberrima103.2726.5481.27379forward
CNT30253208Zea maysAvena sativa100.8230.7888.65370forward
CNT3041960Zea maysChlamydomonas reinhardtii44.4147.887.12163forward
CNT30608822Zea maysGossypium raimondii51.528.2187.83189forward
CNT30209019Zea maysHelianthus annuus47.6820.9686.86175forward
CNT30363168Zea maysSorghum bicolor47.1417.5598.84173forward
CNT30433292Zea maysPapaver somniferum48.2316.8988.7177forward
CNT30570854Zea maysVitis vinifera36.2466.1787.97133forward
CNT30706519Zea maysPrunus avium50.1422.285.87184forward
CNT3033661Zea maysTheobroma cacao48.585.5887.64178forward
CNT3057373Zea maysAmborella trichopoda72.7548.9984.27267forward
CNT30332119Zea maysDioscorea rotundata45.526.389.82167forward
CNT3099978Zea maysOryza rufipogon47.6821.688.57175forward
CNT30575061Zea maysOryza barthii50.1420.2490.76184forward
CNT30117026Zea maysOryza nivara34.618.991.34127forward
CNT30333708Zea maysCynara cardunculus51.523.3385.71189forward
CNT3049477Zea maysCucumis sativus33.7943.6688.71124forward

Expression of CNT305432

Peptides detected in this lncRNA

>peptide 1 (66 aa)
SAVASWYCWYSDTRSFMLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRRNISWMDGYHKHWT*

>peptide 2 (76 aa)
ISSGILVLLVLGHQIVHVALSFGELHLIHALTSVPMQESLPPEHSSELLAHTAEHLLDGRISQTLDLTLLGIHSTK*

Sequence

>CNT305432
ATCAGCAGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGATCGTTCATGTTGCTCTCAGCTTCGGTGAACTCCATCTCATCCATGCCCTCACCAGTG
TACCAATGCAAGAAAGCCTTCCTCCTGAACATAGCAGTGAACTGCTCGCTCACACGGCGGAACATCTCCTGGATGGACGGATATCACAAACACTGGACTT
GACGTTGTTGGGGATCCACTCCACAAAATAGGACGAGTTCTTGTTCTGGACATTAATCATTTGCTCATCAACCTCCTTAGTGCTCATCTTGCCACGGAAC
ATGGCAGAGGCTGTGAGATAACGACCATGGCGTGGGTCAGCAGCACACATCATGTTCTTGGCATCCC