CANTATAdb - search

Detailed information on CNT30543164

BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 4e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019671	Brassica napus	Citrullus lanatus	33.6	33.27	84.52	168	forward

Expression of CNT30543164

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGQSCLLGKASPRPLPMVPLRQLCNPQQLP*

>peptide 2 (43 aa)
SETQWVKAASWVKQVLGLSQWSLSGNSVTLNSSHEDHLSSPNG*

>peptide 3 (64 aa)
MGCPMGPLAWRRSSSLSHGRFQGLLMLKEKASRPFRRRQGRREPWLRQPLERFFFFVDFMGFFL*

Sequence

>CNT30543164
TAGCGAGACCCAATGGGTCAAAGCTGCCTCCTGGGTAAAGCAAGTCCTCGGCCTCTCCCAATGGTCCCTCTCCGGCAACTCTGTAACCCTCAACAGCTCC
CATGAGGATCACCTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTCGGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCGGCTGATAGA
CCGGCGGTGTCCCATCCGTAGTCACCAGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCAGAGAATGGACCTAGGTACTTGACTCTTTCGGAACCGT
ACCATGGGCTGCCCGATGGGCCCTTTGGCTTGGCGACGGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCTGAAGGAGAAAGCTTCAC
GGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATGGTTGAGGCAGCCATTAGAACGTTTCTTCTTTTTTGTTGATTTTATGGGTTTTTTTTTGTGACT